WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 37986749

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
209726968	GT-AG	0.0001617804906067	2886	rna-XM_047298587.1 37986749	1	32885	35770	Vigna umbellata 87088	AAG\|GTTTCACCTT...ATATACTTAAAA/TGTTAATTCATG...TATAG\|GTT	1	1	13.023
209726969	GT-AG	1.000000099473604e-05	238	rna-XM_047298587.1 37986749	2	32505	32742	Vigna umbellata 87088	CAG\|GTTCTGTTGT...AGTTTTTTATCA/TAGTTTTTTATC...AACAG\|GGG	2	1	29.988
209726970	GT-AG	0.0545988397026866	106	rna-XM_047298587.1 37986749	3	32308	32413	Vigna umbellata 87088	AAG\|GTATATTCAG...TCTCCCTTGACT/CCTTGACTAATT...ATTAG\|ATG	0	1	40.86
209726971	GT-AG	3.075315792977876e-05	1420	rna-XM_047298587.1 37986749	4	30810	32229	Vigna umbellata 87088	AAG\|GTAAATCTTT...TGGACTTTAACA/TTGTTATTTAGA...TCCAG\|GGA	0	1	50.179
209726972	GT-AG	0.0009600999281875	97	rna-XM_047298587.1 37986749	5	30632	30728	Vigna umbellata 87088	CAA\|GTATGTCATT...TGTTTCTTGTTG/GTGTAACTAATT...TGAAG\|GTT	0	1	59.857
209726973	GT-AG	1.000000099473604e-05	912	rna-XM_047298587.1 37986749	6	29630	30541	Vigna umbellata 87088	AAG\|GTAATTAACA...GTCCACTTATTT/AGTCCACTTATT...TACAG\|GAA	0	1	70.609
209726974	GT-AG	1.000000099473604e-05	339	rna-XM_047298587.1 37986749	7	29225	29563	Vigna umbellata 87088	CAG\|GTTAGTTCTC...GTGTCCTTGAAT/TTTGTTTTGATG...CCTAG\|CCC	0	1	78.495
209726975	GT-AG	1.000000099473604e-05	117	rna-XM_047298587.1 37986749	8	29021	29137	Vigna umbellata 87088	AAG\|GTAAATTGTT...AACTGATTAATC/AGATAACTGATT...TTCAG\|ATC	0	1	88.889

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);