WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 37957389

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
209597886	GT-AG	0.0007710267447084	2121	rna-XM_014658278.2 37957389	1	25179133	25181253	Vigna radiata 157791	CAA\|GTAGGTTCTT...TGATCCTTATTG/TTACTTCTAATT...TGCAG\|GCA	0	1	1.431
209597887	GT-AG	2.92985540737575e-05	1305	rna-XM_014658278.2 37957389	2	25181341	25182645	Vigna radiata 157791	AGT\|GTAGGTTAAA...ATATCTGTAAAC/TATATTGTCAAT...TGTAG\|GAC	0	1	4.025
209597888	GT-AG	0.0001566188041918	118	rna-XM_014658278.2 37957389	3	25182736	25182853	Vigna radiata 157791	ACT\|GTTAGTTTTC...CTTCTCTTATTT/ACTTCTCTTATT...GGCAG\|GCT	0	1	6.708
209597889	GT-AG	1.000000099473604e-05	100	rna-XM_014658278.2 37957389	4	25182941	25183040	Vigna radiata 157791	TTG\|GTTAGTGACA...TTGTTTTTATTA/ATTATATTAATT...TCCAG\|ATT	0	1	9.302
209597890	GT-AG	4.6246118516529616e-05	742	rna-XM_014658278.2 37957389	5	25183161	25183902	Vigna radiata 157791	GAT\|GTAAATATGC...AATTGCTTATTA/AAATTGCTTATT...ATCAG\|GAT	0	1	12.88
209597891	GT-AG	1.000000099473604e-05	215	rna-XM_014658278.2 37957389	6	25185997	25186211	Vigna radiata 157791	CAG\|GTGCATTCTT...GTTTCTTTCACT/GTTTCTTTCACT...ATTAG\|GTT	0	1	75.313
209597892	GT-AG	0.0011259430610482	393	rna-XM_014658278.2 37957389	7	25186359	25186751	Vigna radiata 157791	CAG\|GTATTTTCTT...CTCCGTTTATTT/CTAATACTGATT...TTTAG\|CTC	0	1	79.696
209597893	GT-AG	1.000000099473604e-05	237	rna-XM_014658278.2 37957389	8	25187279	25187515	Vigna radiata 157791	CAG\|GTAAGCAAAA...CTCTCTTTGATG/CCTTTGTTTATG...TGCAG\|CCG	2	1	95.408

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);