WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 37957385

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
209597861	GT-AG	1.000000099473604e-05	281	rna-XM_014662307.2 37957385	3	11411159	11411439	Vigna radiata 157791	CTG\|GTTATTTAAT...GTTTTTTTGATT/GTTTTTTTGATT...GTCAG\|GTG	1	1	14.101
209597862	GT-AG	1.000000099473604e-05	397	rna-XM_014662307.2 37957385	4	11411886	11412282	Vigna radiata 157791	GAG\|GTAAAATAAC...TTTTCTGTATCA/TTATAATTAATT...CACAG\|GTT	0	1	25.62
209597863	GT-AG	3.849992866826833e-05	1301	rna-XM_014662307.2 37957385	5	11412469	11413769	Vigna radiata 157791	AAG\|GTATTTGAAA...GGTTTTCTGATG/GGTTTTCTGATG...TGCAG\|ACA	0	1	30.424
209597864	GT-AG	1.000000099473604e-05	327	rna-XM_014662307.2 37957385	6	11413878	11414204	Vigna radiata 157791	CAG\|GTGTGTATCT...TATTTTTTAAGT/TATTTTTTAAGT...TTCAG\|GTG	0	1	33.213
209597865	GT-AG	1.000000099473604e-05	86	rna-XM_014662307.2 37957385	7	11414409	11414494	Vigna radiata 157791	AAG\|GTTTGAGCTC...GATTTCTTATGA/TGATTTCTTATG...CGTAG\|GTC	0	1	38.481
209597866	GT-AG	0.000113945754671	501	rna-XM_014662307.2 37957385	8	11416327	11416827	Vigna radiata 157791	AAG\|GTATGTGAAT...TAACTCTTAAAA/TTTTGCATTATT...TGCAG\|ACC	2	1	85.795
209604563	GT-AG	1.000000099473604e-05	189	rna-XM_014662307.2 37957385	1	11410608	11410796	Vigna radiata 157791	ACA\|GTGGGTCTCT...TATTCATTGTAT/TTGTATATGAAT...TGAAG\|GTT		0	10.098
209604564	GT-AG	0.0002081870227251	175	rna-XM_014662307.2 37957385	2	11410876	11411050	Vigna radiata 157791	CAG\|GTATGGATTG...AACTTCTTGAAA/AACTTCTTGAAA...TGTAG\|TTA		0	12.138

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);