WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 37957371

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
209597731	GT-AG	2.0783955712988936e-05	2146	rna-XM_014656625.2 37957371	3	4963760	4965905	Vigna radiata 157791	CAG\|GTTAGCTTAT...CTGTCTTTGACC/CTGTCTTTGACC...TTCAG\|GTA	1	1	41.272
209597732	GC-AG	0.0002663441930268	2285	rna-XM_014656625.2 37957371	4	4967251	4969535	Vigna radiata 157791	CAG\|GCATGTTTTT...TCTTTCTTAAAC/CTCTTTCTTAAA...CTCAG\|AAC	2	1	74.956
209597733	GT-AG	2.3537803284495943e-05	585	rna-XM_014656625.2 37957371	5	4969816	4970400	Vigna radiata 157791	CGA\|GTAAGTCAAT...CTGCTCTTAACT/CTGCTCTTAACT...GACAG\|GAA	0	1	81.968
209597734	GT-AG	1.000000099473604e-05	85	rna-XM_014656625.2 37957371	6	4970509	4970593	Vigna radiata 157791	CAG\|GTTTGTGGTG...CTCTTCTGAATT/TCTATTCTCAGT...TGCAG\|TCG	0	1	84.673
209597735	GT-AG	1.000000099473604e-05	583	rna-XM_014656625.2 37957371	7	4970873	4971455	Vigna radiata 157791	AAT\|GTAAGGACCA...ATAAACTTAGCT/ACGTGATTAATT...TGTAG\|GTC	0	1	91.66
209597736	GT-AG	1.000000099473604e-05	391	rna-XM_014656625.2 37957371	8	4971600	4971990	Vigna radiata 157791	CAG\|GTAATAATCT...CCTTTTTTAGTT/TTATTATTTATT...TACAG\|GAA	0	1	95.267
209604555	GT-AG	1.000000099473604e-05	94	rna-XM_014656625.2 37957371	1	4962058	4962151	Vigna radiata 157791	AAG\|GTTATCTTCT...ACTGTTCTAACT/ACTGTTCTAACT...ATAAG\|AAC		0	5.109
209604556	GT-AG	4.984644281761549e-05	140	rna-XM_014656625.2 37957371	2	4962389	4962528	Vigna radiata 157791	CGG\|GTAAGCTCCA...TTGCCCTTTCCC/TCCCATCTCAAC...TTTAG\|TGC		0	11.044

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);