WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 37957355

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
209597612	GT-AG	1.000000099473604e-05	136	rna-XM_014656002.2 37957355	1	2450678	2450813	Vigna radiata 157791	AAG\|GTTATTCAGT...TCTTCTTTGCTT/TTTTTTCTCATG...TGCAG\|TAT	0	1	6.56
209597613	GT-AG	0.0264828665426954	474	rna-XM_014656002.2 37957355	2	2450149	2450622	Vigna radiata 157791	CAG\|GTATGTTCAT...TGTTTCTTAATT/CTGTTTCTTAAT...ACCAG\|AAA	1	1	8.027
209597614	GT-AG	1.000000099473604e-05	573	rna-XM_014656002.2 37957355	3	2449400	2449972	Vigna radiata 157791	AAG\|GTGCTTTGAA...GTTGGTTTAACG/CGTTTTGTGATT...TTTAG\|GTG	0	1	12.72
209597615	GT-AG	1.000000099473604e-05	652	rna-XM_014656002.2 37957355	4	2448547	2449198	Vigna radiata 157791	CAG\|GTGAGGTTAA...TTGGTCTTCATT/TTGGTCTTCATT...AACAG\|GCC	0	1	18.08
209597616	GT-AG	1.000000099473604e-05	93	rna-XM_014656002.2 37957355	5	2448194	2448286	Vigna radiata 157791	CAT\|GTGAGGGCTT...GTGATCATGACA/TGTTGGTTTACT...AACAG\|GAG	2	1	25.013
209597617	GT-AG	9.557049909099878e-05	170	rna-XM_014656002.2 37957355	6	2447707	2447876	Vigna radiata 157791	AAG\|GTAACTGAAC...ATCTCTTTGAAA/TTTATGTTGATC...AGCAG\|GTC	1	1	33.467
209597618	GT-AG	1.000000099473604e-05	122	rna-XM_014656002.2 37957355	7	2447361	2447482	Vigna radiata 157791	CAG\|GTTTAAAATA...GGTTTGTTAATA/GGTTTGTTAATA...ACCAG\|GTG	0	1	39.44
209597619	GT-AG	0.0053289122940111	77	rna-XM_014656002.2 37957355	8	2446464	2446540	Vigna radiata 157791	CCG\|GTATGGTTTA...ATTCTCTAAATT/GTTTGTTTGAGT...GTTAG\|CTA	1	1	61.307
209597620	GT-AG	0.0003664792893753	3987	rna-XM_014656002.2 37957355	9	2442235	2446221	Vigna radiata 157791	CAG\|GTAAACTCAA...GTGTTTTTGATT/GTGTTTTTGATT...TGCAG\|CAA	0	1	67.76

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);