WtMTA: introns: 10 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 37957338

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
209597415	GT-AG	6.089689550677107e-05	217	rna-XM_014639842.2 37957338	1	30357554	30357770	Vigna radiata 157791	ACT\|GTAAGATTTG...AGGTGTTTAATT/AGGTGTTTAATT...TGCAG\|ATT	0	1	45.972
209597416	GT-AG	1.624713514572237e-05	83	rna-XM_014639842.2 37957338	2	30357150	30357232	Vigna radiata 157791	AAT\|GTAATGTCAT...CATTCTTTATTC/ACATTCTTTATT...TGCAG\|GAA	0	1	53.216
209597417	GT-AG	1.245064988473556e-05	131	rna-XM_014639842.2 37957338	3	30356932	30357062	Vigna radiata 157791	TTG\|GTAATTCAAT...TTTGTTTTATCT/GTTTGTTTTATC...CTCAG\|ATG	0	1	55.179
209597418	GT-AG	0.0016825740714675	71	rna-XM_014639842.2 37957338	4	30356273	30356343	Vigna radiata 157791	AGG\|GTATGTATGA...AGTATTTTGATA/AGTATTTTGATA...TGCAG\|GTC	0	1	68.45
209597419	GT-AG	1.000000099473604e-05	208	rna-XM_014639842.2 37957338	5	30355900	30356107	Vigna radiata 157791	CAG\|GTAATGGCAA...ATTTCCATTTTA/TAGATATTCATG...ACTAG\|AAA	0	1	72.173
209597420	GT-AG	1.000000099473604e-05	144	rna-XM_014639842.2 37957338	6	30355461	30355604	Vigna radiata 157791	CTG\|GTGAGACTTC...TCTCCCTTGATT/AGTTTATTAATT...TCTAG\|GAT	1	1	78.831
209597421	GT-AG	1.000000099473604e-05	83	rna-XM_014639842.2 37957338	7	30355163	30355245	Vigna radiata 157791	CAG\|GTAATTGATA...TTGTCTGTACCA/GCATATATAATT...GACAG\|GTA	0	1	83.683
209597422	GT-AG	1.000000099473604e-05	73	rna-XM_014639842.2 37957338	8	30354784	30354856	Vigna radiata 157791	GAG\|GTAAAACCAA...TTGTGCTTAACT/TTGTGCTTAACT...TGAAG\|GTT	0	1	90.589
209597423	GT-AG	4.8025868087832224e-05	204	rna-XM_014639842.2 37957338	9	30354516	30354719	Vigna radiata 157791	CAG\|GTACATTGGC...GTTTCCTGGGTA/TGGGTAATAACA...TACAG\|TTG	1	1	92.033
209597424	GT-AG	3.527836194283828e-05	359	rna-XM_014639842.2 37957338	10	30353917	30354275	Vigna radiata 157791	ATG\|GTAATTTGGA...TTTTTTTTATCA/TTTTTTTTTATC...TATAG\|GAA	1	1	97.45

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);