WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 37928542

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
209469398	GT-AG	1.000000099473604e-05	102	rna-XM_017584267.1 37928542	1	33202604	33202705	Vigna angularis 3914	AAG\|GTCCGTAAAT...TATGTCTTGGCT/ATGCATCTCATA...TGAAG\|GTT	1	1	72.082
209469399	GT-AG	1.000000099473604e-05	134	rna-XM_017584267.1 37928542	3	33202144	33202277	Vigna angularis 3914	CAG\|GTGATTTTGT...ACTATTTTGATA/ACTATTTTGATA...TTTAG\|GAG	0	1	76.39
209469400	GT-AG	1.000000099473604e-05	84	rna-XM_017584267.1 37928542	4	33201991	33202074	Vigna angularis 3914	CAG\|GTTCGATGTC...AACACCTTGTTG/TATGTTGTCAGC...ACTAG\|GTT	0	1	78.051
209469401	GT-AG	1.000000099473604e-05	100	rna-XM_017584267.1 37928542	5	33201738	33201837	Vigna angularis 3914	ATG\|GTTTGTGTCT...ATGACCTAAGAA/TAAGAATTAACT...AACAG\|AGA	0	1	81.733
209469402	GT-AG	0.0001489822922579	121	rna-XM_017584267.1 37928542	6	33201453	33201573	Vigna angularis 3914	CAG\|GTAATTTCTG...GTTTCCTTATTG/TGTTTCCTTATT...ATTAG\|GAA	2	1	85.68
209469403	GT-AG	1.000000099473604e-05	2149	rna-XM_017584267.1 37928542	7	33199156	33201304	Vigna angularis 3914	AAG\|GTTTAAATGG...TGATCCTTCATT/TTGTTTTTTACA...ATCAG\|GTT	0	1	89.242
209469404	GT-AG	3.547503315030927e-05	108	rna-XM_017584267.1 37928542	8	33198925	33199032	Vigna angularis 3914	AAG\|GTTTATATGC...GTGTTTTTATAT/TAGTTTCTCACC...GTTAG\|GTT	0	1	92.202
209469405	GT-AG	0.0037907597432079	91	rna-XM_017584267.1 37928542	9	33198746	33198836	Vigna angularis 3914	TTG\|GTAACTTTCC...TGATCGTTTGCA/GTTAAATTGATC...TTCAG\|GTG	1	1	94.32

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);