introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 37764349

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
208417160 GT-AG 0 1.000000099473604e-05 14252 rna-XM_044432188.1 37764349 2 6143896 6158147 Varanus komodoensis 61221 ACG|GTAAGTAGAG...AGTTGCTTATCT/GTGTGTTTCATT...TTCAG|GCC 2 1 15.206
208417161 GT-AG 0 1.000000099473604e-05 4748 rna-XM_044432188.1 37764349 3 6158178 6162925 Varanus komodoensis 61221 AAG|GTAGGATACA...CGTCTTTTAATT/CGTCTTTTAATT...TCTAG|CTA 2 1 15.828
208417162 GT-AG 0 1.000000099473604e-05 4251 rna-XM_044432188.1 37764349 4 6163050 6167300 Varanus komodoensis 61221 TTG|GTAAGTAAAC...TCTTCCTGAACT/ATCATTTTAATT...CTTAG|GGT 0 1 18.397
208417163 GT-AG 0 1.000000099473604e-05 2038 rna-XM_044432188.1 37764349 5 6167429 6169466 Varanus komodoensis 61221 GAG|GTAAGGGCTT...TTGATTTTGATG/TTGATTTTGATG...CTTAG|TCA 2 1 21.048
208417164 GT-AG 0 1.6023183938038634e-05 1368 rna-XM_044432188.1 37764349 6 6169565 6170932 Varanus komodoensis 61221 CAA|GTAAGTTGGT...GTCTCCATGATA/TGATATGTCAAT...TTCAG|GCG 1 1 23.079
208417165 GT-AG 0 1.5722409126311788e-05 9155 rna-XM_044432188.1 37764349 7 6171031 6180185 Varanus komodoensis 61221 AGG|GTACGTAAAG...TTCTGCTTAGTG/CTATCTTTCATG...TACAG|ATA 0 1 25.109
208429156 GT-AG 0 1.000000099473604e-05 42898 rna-XM_044432188.1 37764349 1 6100466 6143363 Varanus komodoensis 61221 AAG|GTAAGGGATG...TTTTCCTTTTTC/TGAGCCTTTACA...CAAAG|CAT   0 4.786

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);