WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 37556834

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
207135330	GT-AG	4.716731228220464	2400	rna-XM_026396639.1 37556834	1	2962055	2964454	Urocitellus parryii 9999	A\|GTAAGTATAT...TTCCCCTTGTCT/TATAAATTAATA...CTCAG\|TGA	1	1	0.033
207135331	GT-AG	1.1931729273850204e-05	1236	rna-XM_026396639.1 37556834	2	2964716	2965951	Urocitellus parryii 9999	AAA\|GTAAGTATCA...GCCTCTCTAACA/GCCTCTCTAACA...AACAG\|GTC	1	1	8.52
207135332	GT-AG	6.368787977481626e-05	4940	rna-XM_026396639.1 37556834	3	2967947	2972886	Urocitellus parryii 9999	CAG\|GTATTGCATA...CAATCTTTATTT/TCTTTATTTACT...GGCAG\|GTG	1	1	73.398
207135333	GT-AG	1.000000099473604e-05	1445	rna-XM_026396639.1 37556834	4	2972980	2974424	Urocitellus parryii 9999	TAG\|GTCAGATTTT...GGTATCTTAATG/TTTCCTTTCAAT...TGCAG\|CTG	1	1	76.423
207135334	GT-AG	0.0049464698686608	2016	rna-XM_026396639.1 37556834	5	2974596	2976611	Urocitellus parryii 9999	TAG\|GTAACTATTG...ATCTTTTTATTA/AATCTTTTTATT...TTCAG\|CTC	1	1	81.984
207135335	GT-AG	1.000000099473604e-05	1227	rna-XM_026396639.1 37556834	6	2976705	2977931	Urocitellus parryii 9999	TGA\|GTAAGAATGA...AGTTCCTGAACT/CCATCCTTCATC...TCCAG\|TTG	1	1	85.008
207135336	GT-AG	1.000000099473604e-05	13826	rna-XM_026396639.1 37556834	7	2978100	2991925	Urocitellus parryii 9999	TAG\|GTGGGTATGC...ATCTTTTTAAAA/AACATATTTATT...CCCAG\|GTG	1	1	90.472

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);