WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 36995248

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
204419634	GT-AG	0.0007557688267961	2580	rna-XM_038844290.1 36995248	1	8411205	8413784	Tripterygium wilfordii 458696	GAG\|GTACCGAACC...TAATCTTTTGCA/ATCTTTTGCATG...AACAG\|TTC	2	1	1.712
204419635	GT-AG	1.000000099473604e-05	671	rna-XM_038844290.1 36995248	2	8410284	8410954	Tripterygium wilfordii 458696	AAG\|GTACGAAATT...AGTCCTGTAACT/AGTCCTGTAACT...TTCAG\|GTT	0	1	9.355
204419636	GT-AG	1.000000099473604e-05	1454	rna-XM_038844290.1 36995248	3	8408706	8410159	Tripterygium wilfordii 458696	AAG\|GTTAGAAGTT...TGTTTCTTGATT/TGTTTCTTGATT...TAAAG\|TTG	1	1	13.146
204419637	GT-AG	3.0177797997007408e-05	110	rna-XM_038844290.1 36995248	4	8408264	8408373	Tripterygium wilfordii 458696	TGT\|GTAAGATATA...TGCTTTTTGATC/TGCTTTTTGATC...GGCAG\|GCC	0	1	23.296
204419638	GT-AG	0.000637091701444	677	rna-XM_038844290.1 36995248	5	8405825	8406501	Tripterygium wilfordii 458696	TAG\|GTAGTCTATT...TCAACTTTATTT/ATTTTTTTCACA...AACAG\|GGC	1	1	77.163
204419639	GT-AG	1.729807649915309e-05	1000	rna-XM_038844290.1 36995248	6	8404571	8405570	Tripterygium wilfordii 458696	AAG\|GTAGGTTGTC...GCCCTTTTAATT/TTTATCTTTATG...TGCAG\|GAT	0	1	84.928
204423933	GT-AG	1.000000099473604e-05	1138	rna-XM_038844290.1 36995248	7	8403299	8404436	Tripterygium wilfordii 458696	AAA\|GTGAGTATAT...CAAATTATAATT/CAAATTATAATT...TGCAG\|GAT		0	89.025

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);