introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 36668757

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
203217858 GT-AG 0 5.077140583299212e-05 135 transcript:TriadT62776 36668757 1 4478 4612 Trichoplax adhaerens 10228 AAA|GTAGGTCTCA...AAAATTTTAAAA/AAAATTTTAAAA...AATAG|TGC 2 1 28.222
203217859 GT-AG 0 1.000000099473604e-05 796 transcript:TriadT62776 36668757 2 3266 4061 Trichoplax adhaerens 10228 AAG|GTAAAAGGAA...AATTTCTGATTA/AAATTTCTGATT...ACTAG|AAA 1 1 58.171
203217860 GT-AG 0 0.0113501067889234 1836 transcript:TriadT62776 36668757 3 1337 3172 Trichoplax adhaerens 10228 CAG|GTATACAAAA...GATTCTTTATCT/ATTGGTTTAATA...AACAG|TCG 1 1 64.867
203217861 GT-AG 0 1.000000099473604e-05 157 transcript:TriadT62776 36668757 4 1120 1276 Trichoplax adhaerens 10228 GTG|GTTAGTTAGG...TATTTTTTGATT/TATTTTTTGATT...TTTAG|CAT 1 1 69.186
203217862 GT-AG 0 1.531730012079213e-05 87 transcript:TriadT62776 36668757 5 837 923 Trichoplax adhaerens 10228 TGA|GTAAGTCTGC...TAAACTGTGACA/AAATGTATCATG...CACAG|GAA 2 1 83.297
203217863 GT-AG 0 1.000000099473604e-05 39 transcript:TriadT62776 36668757 6 631 669 Trichoplax adhaerens 10228 CTG|GTAATTAATC...TTTATTTTACCA/TAATTATTTATT...TTTAG|ATA 1 1 95.32

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);