WtMTA: introns: 5 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

5 rows where transcript_id = 35543698

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
199805026	GT-AG	1.000000099473604e-05	100	rna-gnl\|WGS:VXBI\|TOXRED_R01272_mrna 35543698	1	7333	7432	Toxostoma redivivum 99882	AGG\|GTGAGTGGGG...CTGGCCTTCCCG/CCTGGGCTCACC...CCTAG\|ATG	0	1	12.308
199805027	GT-AG	1.000000099473604e-05	276	rna-gnl\|WGS:VXBI\|TOXRED_R01272_mrna 35543698	2	7522	7797	Toxostoma redivivum 99882	CCT\|GTGAGTGGGG...AGTTCCGTGTTC/ACAACACTGAGG...CCCAG\|GCA	2	1	27.521
199805028	GT-AG	1.000000099473604e-05	76	rna-gnl\|WGS:VXBI\|TOXRED_R01272_mrna 35543698	3	7883	7958	Toxostoma redivivum 99882	AAG\|GTGAGGGATG...AACAGGGTGACG/AACAGGGTGACG...CCCAG\|GAG	0	1	42.051
199805029	GT-AG	1.000000099473604e-05	172	rna-gnl\|WGS:VXBI\|TOXRED_R01272_mrna 35543698	4	8049	8220	Toxostoma redivivum 99882	CGG\|GTAGGCCAGG...TTGTTGCTGACT/TTGTTGCTGACT...TGCAG\|GAG	0	1	57.436
199805030	GT-AG	1.000000099473604e-05	174	rna-gnl\|WGS:VXBI\|TOXRED_R01272_mrna 35543698	5	8378	8551	Toxostoma redivivum 99882	GCG\|GTGAGCAGAG...GCTACCTGGATC/GAGGGGGTCACA...CCCAG\|TGC	1	1	84.274

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);