WtMTA: introns: 6 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 35360422

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
198673176	GT-AG	6.106017469622881e-05	57	rna-gnl\|WGS:JNBS\|THRCLA_mrna00100.1 35360422	1	14063	14119	Thraustotheca clavata 74557	GAG\|GTATTGATTG...TTGTGCATAATG/TTGTGCATAATG...ATTAG\|GTG	0	1	3.356
198673177	GT-AG	0.0204575903677052	43	rna-gnl\|WGS:JNBS\|THRCLA_mrna00100.1 35360422	2	12883	12925	Thraustotheca clavata 74557	AAC\|GTATATTGTT...GAATTTTTGCTG/TTTTTGCTGATT...TTTAG\|ATT	0	1	47.222
198673178	GT-AG	0.0053593191012688	44	rna-gnl\|WGS:JNBS\|THRCLA_mrna00100.1 35360422	3	12601	12644	Thraustotheca clavata 74557	GAG\|GTATTTATTA...AGTTATTTAACT/AGTTATTTAACT...ATTAG\|GTA	1	1	56.404
198673179	GT-AG	0.0005409156842538	46	rna-gnl\|WGS:JNBS\|THRCLA_mrna00100.1 35360422	4	12493	12538	Thraustotheca clavata 74557	AAT\|GTAATTTTTC...GTTACTTTGTTT/ACTTTGTTTATT...TGTAG\|TCT	0	1	58.796
198673180	GT-AG	0.4764925282210761	45	rna-gnl\|WGS:JNBS\|THRCLA_mrna00100.1 35360422	5	12304	12348	Thraustotheca clavata 74557	TGG\|GTATTCTTTG...TTGTGTTTAAAT/TAAATATTGATA...TTTAG\|GTA	0	1	64.352
198673181	GT-AG	0.0002100495376743	48	rna-gnl\|WGS:JNBS\|THRCLA_mrna00100.1 35360422	6	11762	11809	Thraustotheca clavata 74557	GCG\|GTATGAATTG...TATATATTGATA/TATATATTGATA...TTTAG\|ATA	2	1	83.41

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);