WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 35360383

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
198673000	GT-AG	0.0037008905984855	44	rna-gnl\|WGS:JNBS\|THRCLA_mrna00044.1 35360383	1	13254	13297	Thraustotheca clavata 74557	CAT\|GTATGTATTA...GTTTTCATAGAA/ATGGTTTTCATA...TATAG\|TTT	2	1	9.893
198673001	GT-AG	2.303121222373724e-05	41	rna-gnl\|WGS:JNBS\|THRCLA_mrna00044.1 35360383	2	13409	13449	Thraustotheca clavata 74557	GAG\|GTACTGTAAA...GATTTCTGAATT/TGATTTCTGAAT...ATTAG\|TTA	2	1	14.117
198673002	GT-AG	1.000000099473604e-05	99	rna-gnl\|WGS:JNBS\|THRCLA_mrna00044.1 35360383	3	14155	14253	Thraustotheca clavata 74557	ACA\|GTAAAATGAC...AGTCTCTAAATA/TAGTAACTTATT...CGTAG\|TAT	2	1	40.944
198673003	GT-AG	0.001678128089927	43	rna-gnl\|WGS:JNBS\|THRCLA_mrna00044.1 35360383	4	14402	14444	Thraustotheca clavata 74557	ACA\|GTATGTCAAC...CACCTCTTATAC/TATGTTATCACC...TGTAG\|CTC	0	1	46.575
198673004	GT-AG	0.0193212719735748	43	rna-gnl\|WGS:JNBS\|THRCLA_mrna00044.1 35360383	5	15288	15330	Thraustotheca clavata 74557	CTG\|GTATACCTAT...TCATTGTTAATT/CATTGCTTCATT...TGTAG\|AAT	0	1	78.653
198673005	GT-AG	0.0083479509673683	45	rna-gnl\|WGS:JNBS\|THRCLA_mrna00044.1 35360383	6	15505	15549	Thraustotheca clavata 74557	CGA\|GTATTTGTAG...ATTGTCTTACAG/TATTGTCTTACA...GTTAG\|AAT	0	1	85.274
198673006	GT-AG	1.000000099473604e-05	42	rna-gnl\|WGS:JNBS\|THRCLA_mrna00044.1 35360383	7	15682	15723	Thraustotheca clavata 74557	CAT\|GTAAGCAATT...AAATACTAAATT/AAAATACTAAAT...TGTAG\|CAT	0	1	90.297
198673007	GT-AG	0.0003087734371851	43	rna-gnl\|WGS:JNBS\|THRCLA_mrna00044.1 35360383	8	15835	15877	Thraustotheca clavata 74557	ATG\|GTATGTGTTA...ATTGGTTTATAA/TATTGGTTTATA...ATTAG\|ATT	0	1	94.521

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);