introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 3504191

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Suggested facets: dinucleotide_pair, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
17296310 GT-AG 0 1.000000099473604e-05 585 rna-XM_037167413.1 3504191 3 2478533 2479117 Artibeus jamaicensis 9417 CAG|GTGCTGGCGG...GTGGCCTTCATG/GTGGCCTTCATG...CATAG|GGG 2 1 22.579
17296311 GT-AG 0 1.000000099473604e-05 309 rna-XM_037167413.1 3504191 4 2477979 2478287 Artibeus jamaicensis 9417 GCG|GTGAGTGGGG...GTCCACTGAGCT/GGTCCACTGAGC...CCCAG|ACT 1 1 35.688
17296312 GT-AG 0 1.000000099473604e-05 1629 rna-XM_037167413.1 3504191 5 2476208 2477836 Artibeus jamaicensis 9417 GAG|GTGTGTCCGG...GGTGGCCTAGCT/GCCTAGCTCACT...CGCAG|GCA 2 1 43.285
17296313 GT-AG 0 1.000000099473604e-05 760 rna-XM_037167413.1 3504191 6 2475282 2476041 Artibeus jamaicensis 9417 AAG|GTGGGTTCCT...CACCCCTTTTCT/CCTCACCTCACT...GGCAG|CTG 0 1 52.167
17296314 GT-AG 0 1.000000099473604e-05 144 rna-XM_037167413.1 3504191 7 2474995 2475138 Artibeus jamaicensis 9417 GGG|GTAGGTTCCT...ACTCACTCAGTG/GGGAGACTCACT...GGCAG|GCA 2 1 59.818
17296315 GT-AG 0 1.000000099473604e-05 1721 rna-XM_037167413.1 3504191 8 2473108 2474828 Artibeus jamaicensis 9417 GAG|GTGAGTGGGC...GCGGCCTGACTG/TGCGGCCTGACT...CCTAG|GAG 0 1 68.7
17296316 GT-AG 0 1.000000099473604e-05 939 rna-XM_037167413.1 3504191 9 2472084 2473022 Artibeus jamaicensis 9417 GCT|GTGAGTCGCC...GGTGCACTGACA/GGTGCACTGACA...TGCAG|TCA 1 1 73.248
17296317 GC-AG 0 1.000000099473604e-05 45 rna-XM_037167413.1 3504191 10 2471782 2471826 Artibeus jamaicensis 9417 AAG|GCCACCCAGA...AGAGCCAGAGTC/GCCAGAGTCACA...CTGAG|GCT 0 1 86.998

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);