WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 34991537

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
196984978	GT-AG	1.000000099473604e-05	81	rna-XM_034169335.1 34991537	3	47779769	47779849	Thalassophryne amazonica 390379	TAA\|GTAAGAATGT...CATATTTTAAAA/CTGGTTATCATA...CACAG\|AAA	2	1	2.197
196984979	GT-AG	1.000000099473604e-05	99	rna-XM_034169335.1 34991537	4	47779638	47779736	Thalassophryne amazonica 390379	CAG\|GTGAATTGTT...TTTTCCTCTACT/ATTAGTTTCAAG...TTTAG\|TTG	1	1	2.653
196984980	GT-AG	1.000000099473604e-05	126	rna-XM_034169335.1 34991537	5	47779429	47779554	Thalassophryne amazonica 390379	CAA\|GTAAGGCACA...GATTTCTTACAA/TGATTTCTTACA...TACAG\|AGT	0	1	3.837
196984981	GT-AG	1.000000099473604e-05	1991	rna-XM_034169335.1 34991537	6	47777341	47779331	Thalassophryne amazonica 390379	AAG\|GTGACAGTTC...ATTTTGTTGACA/ATTTTATTTATT...TCCAG\|CTC	1	1	5.221
196984982	GT-AG	1.000000099473604e-05	27677	rna-XM_034169335.1 34991537	7	47744829	47772505	Thalassophryne amazonica 390379	AAG\|GTAGGTTGCA...TTCTTTTTGTTT/TGTTTCCTTAAT...ACCAG\|CCT	0	1	74.194
196994959	GT-AG	1.000000099473604e-05	7532	rna-XM_034169335.1 34991537	1	47780946	47788477	Thalassophryne amazonica 390379	GAG\|GTGAAGATGC...CCTCCCTTTTCT/TTTCTGCTCAAG...CGGAG\|ATT		0	0.157
196994960	GT-AG	1.000000099473604e-05	869	rna-XM_034169335.1 34991537	2	47779978	47780846	Thalassophryne amazonica 390379	CAG\|GTCAGTATAA...GGTTTTTTATTT/GGGTTTTTTATT...TGCAG\|GGT		0	1.569

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);