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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

24 rows where transcript_id = 3485101

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Suggested facets: dinucleotide_pair, score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
17203043 GT-AG 0 1.000000099473604e-05 857 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 2 55402 56258 Armadillidium vulgare 13347 AAG|GTAAATTGAA...ATATATATATTT/TATATATATATT...CATAG|AGA 2 1 6.469
17203044 GT-AG 0 0.0001572547673828 1796 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 3 53539 55334 Armadillidium vulgare 13347 AAG|GTATGTTATA...ATATATATATTC/TATATATATATT...AGCAG|AAA 0 1 8.345
17203045 GT-AG 0 1.000000099473604e-05 119 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 4 53330 53448 Armadillidium vulgare 13347 CAG|GTAAGTTTCG...TTATTATTATTT/ATTATTATTATT...TTCAG|GAA 0 1 10.865
17203046 GT-AG 0 1.000000099473604e-05 3028 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 5 50179 53206 Armadillidium vulgare 13347 CAG|GTACGTATTT...ATATATATATAT/TATATATATATA...TATAG|AAT 0 1 14.31
17203047 GT-AG 0 0.0003652091462728 234 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 6 49862 50095 Armadillidium vulgare 13347 TAA|GTAAGTTTGT...ATTTTTTTATTT/AATTTTTTTATT...TTTAG|AGT 2 1 16.634
17203048 GT-AG 0 1.000000099473604e-05 155 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 7 49538 49692 Armadillidium vulgare 13347 GAG|GTAAGAATAT...ATATATATAAAA/ATATATATAAAA...TTCAG|GAA 0 1 21.367
17203049 GT-AG 0 1.000000099473604e-05 191 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 8 49177 49367 Armadillidium vulgare 13347 AAG|GTTGGCATTG...TTTCTGTTATTT/CTTTCTGTTATT...TTCAG|TGA 2 1 26.127
17203050 GT-AG 0 0.2216354851589176 114 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 9 48848 48961 Armadillidium vulgare 13347 CAA|GTATGTTTGT...TCATCCTTATTT/CTTATTTTCATC...TATAG|CTA 1 1 32.148
17203051 GT-AG 0 0.1208256626180199 120 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 10 48537 48656 Armadillidium vulgare 13347 GGA|GTATGTTTCA...TGCTTTTTGAAT/TGCTTTTTGAAT...TATAG|GGT 0 1 37.496
17203052 GT-AG 0 3.0754562051906106e-05 83 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 11 48300 48382 Armadillidium vulgare 13347 CAG|GTAATTTTTA...TTATTATTATTA/ATTATTATTATT...TTCAG|GAA 1 1 41.809
17203053 GT-AG 0 1.000000099473604e-05 107 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 12 48050 48156 Armadillidium vulgare 13347 GAG|GTTAGATCAT...AAATTATTAATT/AAATTATTAATT...ATTAG|GGT 0 1 45.813
17203054 GT-AG 0 0.0002207094884398 152 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 13 47768 47919 Armadillidium vulgare 13347 ATG|GTATGAATTT...AGTCCTTTATTT/CTTTATTTCAAA...CACAG|GAG 1 1 49.454
17203055 GT-AG 0 1.000000099473604e-05 1232 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 14 46370 47601 Armadillidium vulgare 13347 TGC|GTAAGTAATA...ATATATATATAT/TATATATATATA...ATTAG|AGT 2 1 54.102
17203056 GT-AG 0 0.0011407431938964 1525 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 15 44772 46296 Armadillidium vulgare 13347 AAG|GTTTGTTTTC...TTTTTTTTATTA/TTTTTTTTTATT...TGTAG|ACA 0 1 56.147
17203057 GT-AG 0 1.000000099473604e-05 221 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 16 44432 44652 Armadillidium vulgare 13347 TAG|GTTAGGACCT...ATGTTATTAACT/ATGTTATTAACT...TGCAG|CTT 2 1 59.479
17203058 GT-AG 0 0.1255605978261823 309 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 17 43582 43890 Armadillidium vulgare 13347 AAG|GTATACTACA...TTAGTCTTAAAT/TTATTGTTGATT...TGCAG|AAA 0 1 74.629
17203059 GT-AG 0 1.000000099473604e-05 153 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 18 43256 43408 Armadillidium vulgare 13347 AAG|GTAAAAATAC...TAAATCTTATTA/TTAAATCTTATT...TGAAG|GGT 2 1 79.474
17203060 GT-AG 0 4.360494807028299e-05 174 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 19 42926 43099 Armadillidium vulgare 13347 GTC|GTAAGTAATA...TTTGCCTTGCTT/TGTATAGTAAAA...TGTAG|TTT 2 1 83.842
17203061 GT-AG 0 1.000000099473604e-05 1243 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 20 41631 42873 Armadillidium vulgare 13347 AGT|GTGAGTAAAA...AGTGTCTGAAAT/TAATTATTCATT...CTTAG|GCC 0 1 85.298
17203062 GT-AG 0 3.367359365051932e-05 875 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 21 40656 41530 Armadillidium vulgare 13347 TTG|GTAAGTTGGA...TTTTTTTTATTT/TTTTTTTTTATT...AATAG|AAG 1 1 88.099
17203063 GT-AG 0 1.000000099473604e-05 85 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 22 40479 40563 Armadillidium vulgare 13347 CAT|GTAAGTAGTT...TGTCTTTTATAT/GTGTCTTTTATA...TTCAG|GTT 0 1 90.675
17203064 GT-AG 0 0.0004986284728515 159 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 23 40221 40379 Armadillidium vulgare 13347 GTT|GTAAGTTGAG...TATGTCTTATTT/TTATGTCTTATT...ATTAG|ATT 0 1 93.447
17203065 GT-AG 0 1.000000099473604e-05 90 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 24 40047 40136 Armadillidium vulgare 13347 GAG|GTAGAAGTTT...ATTTTCTAAATT/TATTTTCTAAAT...TTCAG|ATT 0 1 95.799
17203096 GT-AT 0 1.000000099473604e-05 7189 rna-gnl|WGS:SAUD|Avbf_00033-RA_mrna 3485101 1 56360 63548 Armadillidium vulgare 13347 AAT|GTGTGAAACT...TATATATTAATT/TATATATTAATT...TAAAT|TTT   0 5.069

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.175ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)