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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

11 rows where transcript_id = 3485096

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
17202973 GT-AG 0 1.000000099473604e-05 452 rna-gnl|WGS:SAUD|Avbf_03611-RA_mrna 3485096 1 57230 57681 Armadillidium vulgare 13347 TAG|GTAAGAATTT...ATATTTTTATTA/AATATTTTTATT...CATAG|TTG 1 1 2.886
17202974 GT-AG 0 1.000000099473604e-05 603 rna-gnl|WGS:SAUD|Avbf_03611-RA_mrna 3485096 2 57846 58448 Armadillidium vulgare 13347 TTG|GTGAGTATTA...ATGTTTTTATCT/AATGTTTTTATC...TTTAG|GTC 0 1 14.719
17202975 GT-AG 0 1.000000099473604e-05 3779 rna-gnl|WGS:SAUD|Avbf_03611-RA_mrna 3485096 3 58530 62308 Armadillidium vulgare 13347 GTG|GTAAGTATAT...ATTATTTTATCC/TATTATTTTATC...TTCAG|ATG 0 1 20.563
17202976 GT-AG 0 9.990402067687271e-05 85 rna-gnl|WGS:SAUD|Avbf_03611-RA_mrna 3485096 4 62387 62471 Armadillidium vulgare 13347 GCT|GTAAGTATTA...ACTGTATTAGCA/GGTAAATTTATT...TCCAG|CTT 0 1 26.19
17202977 GT-AG 0 1.000000099473604e-05 82 rna-gnl|WGS:SAUD|Avbf_03611-RA_mrna 3485096 5 62526 62607 Armadillidium vulgare 13347 GAG|GTAAGTCTTA...GAATTTTTATAT/TTATTGCTAATT...TGCAG|TGG 0 1 30.087
17202978 GT-AG 0 1.000000099473604e-05 189 rna-gnl|WGS:SAUD|Avbf_03611-RA_mrna 3485096 6 62741 62929 Armadillidium vulgare 13347 AAG|GTAAGTCGGC...GTGATTTTAATG/GTGATTTTAATG...TTTAG|TAG 1 1 39.683
17202979 GT-AG 0 1.000000099473604e-05 315 rna-gnl|WGS:SAUD|Avbf_03611-RA_mrna 3485096 7 63059 63373 Armadillidium vulgare 13347 TAG|GTAATGATAT...TTATTATTATTA/ATTATTATTATT...TTCAG|ACA 1 1 48.99
17202980 GT-AG 0 0.0045127656092605 1051 rna-gnl|WGS:SAUD|Avbf_03611-RA_mrna 3485096 8 63424 64474 Armadillidium vulgare 13347 CAG|GTATTCATAG...GAAATTTTAAAT/AATTTACTCATT...AATAG|GAA 0 1 52.597
17202981 GT-AG 0 1.4403632662889e-05 883 rna-gnl|WGS:SAUD|Avbf_03611-RA_mrna 3485096 9 64628 65510 Armadillidium vulgare 13347 ATG|GTATTGGAAA...TTAGTTTTAGTT/TTTTAGTTAATA...TGCAG|GCT 0 1 63.636
17202982 GT-AG 0 1.000000099473604e-05 136 rna-gnl|WGS:SAUD|Avbf_03611-RA_mrna 3485096 10 65616 65751 Armadillidium vulgare 13347 CAG|GTAATATATT...TCTTCATTACTC/AAAATCTTCATT...TTCAG|GTT 0 1 71.212
17202983 GT-AG 0 1.0170803157184874e-05 357 rna-gnl|WGS:SAUD|Avbf_03611-RA_mrna 3485096 11 65928 66284 Armadillidium vulgare 13347 AAG|GTAAGATTGT...TTTTCTTTAATT/TTTTCTTTAATT...AACAG|AGG 2 1 83.911

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.938ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)