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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

24 rows where transcript_id = 3485089

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
17202923 GT-AG 0 1.000000099473604e-05 682 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 1 98666 99347 Armadillidium vulgare 13347 ATA|GTTATATAAA...TATAGTTTAATT/TATAGTTTAATT...TCTAG|CAA 1 1 0.693
17202924 GT-AG 0 0.0014298395818677 1597 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 2 96935 98531 Armadillidium vulgare 13347 AAG|GTATATATAT...TTAATTTTATTT/CTTAATTTTATT...CTTAG|GCA 0 1 4.915
17202925 GT-AG 0 0.0010679861106278 92 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 3 96738 96829 Armadillidium vulgare 13347 TCG|GTAAGCATTT...TTTTTTTTAACA/TTTTTTTTAACA...TACAG|CTG 0 1 8.223
17202926 GT-AG 0 1.1294219802673493e-05 520 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 4 96068 96587 Armadillidium vulgare 13347 ATT|GTAAGTTGCA...ATATATATATTA/TATATATATATT...TGCAG|ACT 0 1 12.949
17202927 GT-AG 0 6.190578229858203e-05 2973 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 5 92952 95924 Armadillidium vulgare 13347 AGG|GTATGTACTT...ATGTACTGATTT/TATGTACTGATT...TCTAG|AGA 2 1 17.454
17202928 GT-AG 0 0.000148280226386 513 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 6 92277 92789 Armadillidium vulgare 13347 GAG|GTATTAGTTC...AATATTTTATCT/TTTTATCTCATC...TGTAG|ATC 2 1 22.558
17202929 GT-AG 0 1.000000099473604e-05 127 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 7 91937 92063 Armadillidium vulgare 13347 TAG|GTTAGTAAAC...TTTCTCTCAACT/TTTAAACTTATC...TTTAG|AGA 2 1 29.269
17202930 GT-AG 0 1.000000099473604e-05 1109 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 8 90714 91822 Armadillidium vulgare 13347 CGC|GTAAGATATA...TATGTGTTAATT/TATGTGTTAATT...TTCAG|ACC 2 1 32.861
17202931 GT-AG 0 2.7015807573170213e-05 355 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 9 90220 90574 Armadillidium vulgare 13347 GAG|GTAATTACTG...TATTTCTTATTT/CTATTTCTTATT...AAAAG|GTG 0 1 37.24
17202932 GT-AG 0 1.6407726671615825e-05 385 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 10 89691 90075 Armadillidium vulgare 13347 CAG|GTAATTATTA...GAGACTTTAATT/GTTTATTTTACA...CATAG|GTT 0 1 41.777
17202933 GT-AG 0 0.0036906286083677 1002 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 11 88538 89539 Armadillidium vulgare 13347 AAG|GTATATTTAT...AACTTTTTGAGT/AACTTTTTGAGT...TTCAG|TGG 1 1 46.534
17202934 GT-AG 0 0.0001496216439845 1010 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 12 87376 88385 Armadillidium vulgare 13347 ATG|GTAGACAATC...GGTACTTTATTA/ACTTTATTAATA...TTTAG|CGT 0 1 51.323
17202935 GT-AG 0 0.0245052749945565 318 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 13 86938 87255 Armadillidium vulgare 13347 AAA|GTACTTTCTT...TAGCTTTTAATC/TAGCTTTTAATC...AATAG|CTT 0 1 55.104
17202936 GT-AG 0 3.1491668808946884e-05 357 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 14 86450 86806 Armadillidium vulgare 13347 TAC|GTAAGTAATA...TAGTTTTTAAAT/TAGTTTTTAAAT...TCCAG|AAT 2 1 59.231
17202937 GT-AG 0 1.788942509970933e-05 1260 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 15 85067 86326 Armadillidium vulgare 13347 AAG|GTAGGCAATT...TATTTCTCAGTA/CTCTCTCTCACT...ATCAG|ATT 2 1 63.106
17202938 GT-AG 0 1.000000099473604e-05 540 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 16 84402 84941 Armadillidium vulgare 13347 ATG|GTTAGAAAAA...TTTTCTTTTGCA/GATGTATTAATA...TTCAG|TTC 1 1 67.045
17202939 GT-AG 0 0.0055475843238938 116 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 17 84195 84310 Armadillidium vulgare 13347 TTT|GTATAATACA...ACAATGTTAATC/TTTTGAATGATT...TTTAG|GTA 2 1 69.912
17202940 GT-AG 0 0.000697873763736 235 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 18 83731 83965 Armadillidium vulgare 13347 AAG|GTATATTTCC...ATATATATATAT/TATATATATATA...TGCAG|AGA 0 1 77.127
17202941 GT-AG 0 1.000000099473604e-05 361 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 19 83276 83636 Armadillidium vulgare 13347 TTG|GTAAGATATT...TGTTCGTTATTT/TATTTCTTTATG...TCCAG|AAG 1 1 80.088
17202942 GT-AG 0 0.0003139055695855 438 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 20 82677 83114 Armadillidium vulgare 13347 AAT|GTAAATTTAA...TTTGTCTTTATT/TTTGTCTTTATT...TTAAG|GTG 0 1 85.161
17202943 GT-AG 0 1.0396062570228766e-05 279 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 21 82313 82591 Armadillidium vulgare 13347 CAG|GTAAGTTGAC...CATTTCTTATTA/ACATTTCTTATT...TTCAG|ATA 1 1 87.839
17202944 GT-AG 0 1.000000099473604e-05 721 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 22 81500 82220 Armadillidium vulgare 13347 ACG|GTAAGAAAGG...TATATATTATAT/ATATATATTATA...TATAG|GTT 0 1 90.737
17202945 GT-AG 0 0.0001164109445065 1089 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 23 80324 81412 Armadillidium vulgare 13347 ACT|GTTTGTGGAC...TTGACTTTATTC/ATTGACTTTATT...TTCAG|TTG 0 1 93.478
17202946 GT-AG 0 1.000000099473604e-05 304 rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 24 79930 80233 Armadillidium vulgare 13347 CAG|GTAAGAGAAC...ATATATATATAT/TATATATATATA...AACAG|ATT 0 1 96.314

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 25.516ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)