introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
24 rows where transcript_id = 3485089
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
17202923 | GT-AG | 0 | 1.000000099473604e-05 | 682 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 1 | 98666 | 99347 | Armadillidium vulgare 13347 | ATA|GTTATATAAA...TATAGTTTAATT/TATAGTTTAATT...TCTAG|CAA | 1 | 1 | 0.693 |
17202924 | GT-AG | 0 | 0.0014298395818677 | 1597 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 2 | 96935 | 98531 | Armadillidium vulgare 13347 | AAG|GTATATATAT...TTAATTTTATTT/CTTAATTTTATT...CTTAG|GCA | 0 | 1 | 4.915 |
17202925 | GT-AG | 0 | 0.0010679861106278 | 92 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 3 | 96738 | 96829 | Armadillidium vulgare 13347 | TCG|GTAAGCATTT...TTTTTTTTAACA/TTTTTTTTAACA...TACAG|CTG | 0 | 1 | 8.223 |
17202926 | GT-AG | 0 | 1.1294219802673493e-05 | 520 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 4 | 96068 | 96587 | Armadillidium vulgare 13347 | ATT|GTAAGTTGCA...ATATATATATTA/TATATATATATT...TGCAG|ACT | 0 | 1 | 12.949 |
17202927 | GT-AG | 0 | 6.190578229858203e-05 | 2973 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 5 | 92952 | 95924 | Armadillidium vulgare 13347 | AGG|GTATGTACTT...ATGTACTGATTT/TATGTACTGATT...TCTAG|AGA | 2 | 1 | 17.454 |
17202928 | GT-AG | 0 | 0.000148280226386 | 513 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 6 | 92277 | 92789 | Armadillidium vulgare 13347 | GAG|GTATTAGTTC...AATATTTTATCT/TTTTATCTCATC...TGTAG|ATC | 2 | 1 | 22.558 |
17202929 | GT-AG | 0 | 1.000000099473604e-05 | 127 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 7 | 91937 | 92063 | Armadillidium vulgare 13347 | TAG|GTTAGTAAAC...TTTCTCTCAACT/TTTAAACTTATC...TTTAG|AGA | 2 | 1 | 29.269 |
17202930 | GT-AG | 0 | 1.000000099473604e-05 | 1109 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 8 | 90714 | 91822 | Armadillidium vulgare 13347 | CGC|GTAAGATATA...TATGTGTTAATT/TATGTGTTAATT...TTCAG|ACC | 2 | 1 | 32.861 |
17202931 | GT-AG | 0 | 2.7015807573170213e-05 | 355 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 9 | 90220 | 90574 | Armadillidium vulgare 13347 | GAG|GTAATTACTG...TATTTCTTATTT/CTATTTCTTATT...AAAAG|GTG | 0 | 1 | 37.24 |
17202932 | GT-AG | 0 | 1.6407726671615825e-05 | 385 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 10 | 89691 | 90075 | Armadillidium vulgare 13347 | CAG|GTAATTATTA...GAGACTTTAATT/GTTTATTTTACA...CATAG|GTT | 0 | 1 | 41.777 |
17202933 | GT-AG | 0 | 0.0036906286083677 | 1002 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 11 | 88538 | 89539 | Armadillidium vulgare 13347 | AAG|GTATATTTAT...AACTTTTTGAGT/AACTTTTTGAGT...TTCAG|TGG | 1 | 1 | 46.534 |
17202934 | GT-AG | 0 | 0.0001496216439845 | 1010 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 12 | 87376 | 88385 | Armadillidium vulgare 13347 | ATG|GTAGACAATC...GGTACTTTATTA/ACTTTATTAATA...TTTAG|CGT | 0 | 1 | 51.323 |
17202935 | GT-AG | 0 | 0.0245052749945565 | 318 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 13 | 86938 | 87255 | Armadillidium vulgare 13347 | AAA|GTACTTTCTT...TAGCTTTTAATC/TAGCTTTTAATC...AATAG|CTT | 0 | 1 | 55.104 |
17202936 | GT-AG | 0 | 3.1491668808946884e-05 | 357 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 14 | 86450 | 86806 | Armadillidium vulgare 13347 | TAC|GTAAGTAATA...TAGTTTTTAAAT/TAGTTTTTAAAT...TCCAG|AAT | 2 | 1 | 59.231 |
17202937 | GT-AG | 0 | 1.788942509970933e-05 | 1260 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 15 | 85067 | 86326 | Armadillidium vulgare 13347 | AAG|GTAGGCAATT...TATTTCTCAGTA/CTCTCTCTCACT...ATCAG|ATT | 2 | 1 | 63.106 |
17202938 | GT-AG | 0 | 1.000000099473604e-05 | 540 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 16 | 84402 | 84941 | Armadillidium vulgare 13347 | ATG|GTTAGAAAAA...TTTTCTTTTGCA/GATGTATTAATA...TTCAG|TTC | 1 | 1 | 67.045 |
17202939 | GT-AG | 0 | 0.0055475843238938 | 116 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 17 | 84195 | 84310 | Armadillidium vulgare 13347 | TTT|GTATAATACA...ACAATGTTAATC/TTTTGAATGATT...TTTAG|GTA | 2 | 1 | 69.912 |
17202940 | GT-AG | 0 | 0.000697873763736 | 235 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 18 | 83731 | 83965 | Armadillidium vulgare 13347 | AAG|GTATATTTCC...ATATATATATAT/TATATATATATA...TGCAG|AGA | 0 | 1 | 77.127 |
17202941 | GT-AG | 0 | 1.000000099473604e-05 | 361 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 19 | 83276 | 83636 | Armadillidium vulgare 13347 | TTG|GTAAGATATT...TGTTCGTTATTT/TATTTCTTTATG...TCCAG|AAG | 1 | 1 | 80.088 |
17202942 | GT-AG | 0 | 0.0003139055695855 | 438 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 20 | 82677 | 83114 | Armadillidium vulgare 13347 | AAT|GTAAATTTAA...TTTGTCTTTATT/TTTGTCTTTATT...TTAAG|GTG | 0 | 1 | 85.161 |
17202943 | GT-AG | 0 | 1.0396062570228766e-05 | 279 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 21 | 82313 | 82591 | Armadillidium vulgare 13347 | CAG|GTAAGTTGAC...CATTTCTTATTA/ACATTTCTTATT...TTCAG|ATA | 1 | 1 | 87.839 |
17202944 | GT-AG | 0 | 1.000000099473604e-05 | 721 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 22 | 81500 | 82220 | Armadillidium vulgare 13347 | ACG|GTAAGAAAGG...TATATATTATAT/ATATATATTATA...TATAG|GTT | 0 | 1 | 90.737 |
17202945 | GT-AG | 0 | 0.0001164109445065 | 1089 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 23 | 80324 | 81412 | Armadillidium vulgare 13347 | ACT|GTTTGTGGAC...TTGACTTTATTC/ATTGACTTTATT...TTCAG|TTG | 0 | 1 | 93.478 |
17202946 | GT-AG | 0 | 1.000000099473604e-05 | 304 | rna-gnl|WGS:SAUD|Avbf_00440-RA_mrna 3485089 | 24 | 79930 | 80233 | Armadillidium vulgare 13347 | CAG|GTAAGAGAAC...ATATATATATAT/TATATATATATA...AACAG|ATT | 0 | 1 | 96.314 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);