introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
11 rows where transcript_id = 3485070
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Suggested facets: dinucleotide_pair, score, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
17202837 | GT-AG | 0 | 4.865816582492936e-05 | 290 | rna-gnl|WGS:SAUD|Avbf_00182-RA_mrna 3485070 | 2 | 277872 | 278161 | Armadillidium vulgare 13347 | CTT|GTAAGTTTAA...ATAATTTTTTTT/ATAATAATAATT...TTCAG|AAA | 2 | 1 | 11.159 |
17202838 | GT-AG | 0 | 0.0002417328488224 | 95 | rna-gnl|WGS:SAUD|Avbf_00182-RA_mrna 3485070 | 3 | 277598 | 277692 | Armadillidium vulgare 13347 | CAG|GTAAACACGA...CATTCCTTAACA/AGTTTTCTTACT...TACAG|ATA | 1 | 1 | 19.769 |
17202839 | GT-AG | 0 | 1.000000099473604e-05 | 2292 | rna-gnl|WGS:SAUD|Avbf_00182-RA_mrna 3485070 | 4 | 275105 | 277396 | Armadillidium vulgare 13347 | CAT|GTAATTCATA...TATATATTCGCA/TATATATATATT...CACAG|TAA | 1 | 1 | 29.437 |
17202840 | GT-AG | 0 | 0.0018449777120809 | 260 | rna-gnl|WGS:SAUD|Avbf_00182-RA_mrna 3485070 | 5 | 274738 | 274997 | Armadillidium vulgare 13347 | GGT|GTAAATTGGA...ATTTTCTTATTT/TATTTTCTTATT...TGTAG|AAT | 0 | 1 | 34.584 |
17202841 | GT-AG | 0 | 0.0048122902732631 | 717 | rna-gnl|WGS:SAUD|Avbf_00182-RA_mrna 3485070 | 6 | 273801 | 274517 | Armadillidium vulgare 13347 | GCA|GTAAGTTTTT...ATATTTTTAATG/ATATTTTTAATG...TTCAG|TTT | 1 | 1 | 45.166 |
17202842 | GT-AG | 0 | 1.000000099473604e-05 | 343 | rna-gnl|WGS:SAUD|Avbf_00182-RA_mrna 3485070 | 7 | 273326 | 273668 | Armadillidium vulgare 13347 | CAG|GTGGTTATTA...ATTTTTTTATAT/AATTTTTTTATA...TCGAG|GAA | 1 | 1 | 51.515 |
17202843 | GT-AG | 0 | 1.000000099473604e-05 | 86 | rna-gnl|WGS:SAUD|Avbf_00182-RA_mrna 3485070 | 8 | 273121 | 273206 | Armadillidium vulgare 13347 | AAA|GTGAGTTGTT...ATGATATTAATT/ATGATATTAATT...TTAAG|TAT | 0 | 1 | 57.239 |
17202844 | GT-AG | 0 | 2.6737314894434287e-05 | 1867 | rna-gnl|WGS:SAUD|Avbf_00182-RA_mrna 3485070 | 9 | 271074 | 272940 | Armadillidium vulgare 13347 | TAT|GTAAGTTACT...TATATATTATAT/TATTATATTATA...TACAG|TTA | 0 | 1 | 65.897 |
17202845 | GT-AG | 0 | 1.000000099473604e-05 | 3026 | rna-gnl|WGS:SAUD|Avbf_00182-RA_mrna 3485070 | 1 | 278302 | 281327 | Armadillidium vulgare 13347 | TAG|GTAAGTGTGT...TATATATTATAT/ATATATATTATA...TATAG|GCC | 0 | 5.002 | |
17202846 | AT-AG | 0 | 1.000000099473604e-05 | 2822 | rna-gnl|WGS:SAUD|Avbf_00182-RA_mrna 3485070 | 10 | 268096 | 270917 | Armadillidium vulgare 13347 | AAT|ATAATACAAT...ATATATATATTC/TATATATATATT...TGTAG|ATT | 0 | 73.401 | |
17202847 | GT-AG | 0 | 1.000000099473604e-05 | 1202 | rna-gnl|WGS:SAUD|Avbf_00182-RA_mrna 3485070 | 11 | 266741 | 267942 | Armadillidium vulgare 13347 | CAG|GTAAGGAGAG...TGGACTTTATTA/CAGATTCTTATG...TTCAG|ATT | 0 | 80.76 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);