introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
20 rows where transcript_id = 3485052
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
17202717 | GT-AG | 0 | 1.000000099473604e-05 | 576 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 1 | 48850 | 49425 | Armadillidium vulgare 13347 | AAG|GTTGGATTTT...AGATTTTTACCA/CATTTATTTATT...TATAG|GGT | 2 | 1 | 1.735 |
17202718 | GT-AG | 0 | 0.000154785388592 | 194 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 2 | 48529 | 48722 | Armadillidium vulgare 13347 | CAA|GTATGATATT...TATATATTAAAA/AGAATTTTTATT...CGTAG|GTT | 0 | 1 | 5.894 |
17202719 | GT-AG | 0 | 0.000496475863868 | 426 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 3 | 47994 | 48419 | Armadillidium vulgare 13347 | TTG|GTAGGTTTTA...TCCATTTTAACT/TTTTAACTTATT...CCCAG|GTG | 1 | 1 | 9.463 |
17202720 | GT-AG | 0 | 1.559517970388175e-05 | 824 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 4 | 46997 | 47820 | Armadillidium vulgare 13347 | AAG|GTAATTATTA...ATCATTTTAACC/ATCATTTTAACC...TGCAG|GAA | 0 | 1 | 15.128 |
17202721 | GT-AG | 0 | 1.000000099473604e-05 | 485 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 5 | 46143 | 46627 | Armadillidium vulgare 13347 | GAG|GTTAGTTAAA...TATATATTATAT/ATATATATTATA...TATAG|GTG | 0 | 1 | 27.21 |
17202722 | GT-AG | 0 | 0.0155661915972171 | 1298 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 6 | 44736 | 46033 | Armadillidium vulgare 13347 | AAG|GTATTTTTTT...TTATTATTATTA/ATTATTATTATT...ATTAG|GTG | 1 | 1 | 30.779 |
17202723 | GT-AG | 0 | 0.0006227420628618 | 1002 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 7 | 43582 | 44583 | Armadillidium vulgare 13347 | GAA|GTTACTATGC...TTGACTTTAAAT/TTTTATTTGACT...TTCAG|GAA | 0 | 1 | 35.756 |
17202724 | GT-AG | 0 | 1.000000099473604e-05 | 275 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 8 | 43161 | 43435 | Armadillidium vulgare 13347 | AAG|GTAAGGAAAT...GAAAATTTAATA/GAAAATTTAATA...TTTAG|GTC | 2 | 1 | 40.537 |
17202725 | GT-AG | 0 | 0.0001354927510359 | 595 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 9 | 42466 | 43060 | Armadillidium vulgare 13347 | ATG|GTAAGTTTAT...TTTCCTTTAATT/TTTCCTTTAATT...TTCAG|GTT | 0 | 1 | 43.811 |
17202726 | GT-AG | 0 | 0.0009667825212129 | 496 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 10 | 41833 | 42328 | Armadillidium vulgare 13347 | AAG|GTACACTTCT...ATGTACTAAATT/TATGTACTAAAT...TATAG|GTT | 2 | 1 | 48.297 |
17202727 | GT-AG | 0 | 1.634609505160551e-05 | 87 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 11 | 41580 | 41666 | Armadillidium vulgare 13347 | AAA|GTAAGTTGCA...ATTCTATTATTT/GATTCTATTATT...AAAAG|GCT | 0 | 1 | 53.733 |
17202728 | GT-AG | 0 | 1.000000099473604e-05 | 126 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 12 | 41245 | 41370 | Armadillidium vulgare 13347 | TGG|GTGAGTTATT...AATGTTTTATCA/AATTATTTCATT...AAAAG|TCT | 2 | 1 | 60.576 |
17202729 | GT-AG | 0 | 1.000000099473604e-05 | 1310 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 13 | 39889 | 41198 | Armadillidium vulgare 13347 | TTC|GTGAAATCGC...AGAAACTTAAAT/TATTTGTTTATT...TGCAG|AGT | 0 | 1 | 62.083 |
17202730 | GT-AG | 0 | 0.0004709972026793 | 523 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 14 | 39270 | 39792 | Armadillidium vulgare 13347 | GAG|GTATTATTAT...TATTGCTTATTA/TTATTGCTTATT...TGAAG|GTC | 0 | 1 | 65.226 |
17202731 | GT-AG | 0 | 1.000000099473604e-05 | 560 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 15 | 38572 | 39131 | Armadillidium vulgare 13347 | AAG|GTAAGAGGCG...ATATTTATAATT/TTGTGTTTCATC...TTTAG|GTT | 0 | 1 | 69.745 |
17202732 | GT-AG | 0 | 1.000000099473604e-05 | 380 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 16 | 38019 | 38398 | Armadillidium vulgare 13347 | CAG|GTTTGAAGAC...TTATCTTTAATT/TTATCTTTAATT...TATAG|AAA | 2 | 1 | 75.409 |
17202733 | GT-AG | 0 | 1.000000099473604e-05 | 300 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 17 | 37463 | 37762 | Armadillidium vulgare 13347 | GAG|GTAAGACTAG...TTATCATTATTA/GTTATTATCATT...TAAAG|GAT | 0 | 1 | 83.792 |
17202734 | GT-AG | 0 | 3.2090466035115134e-05 | 385 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 18 | 36948 | 37332 | Armadillidium vulgare 13347 | TGA|GTAAGTACCA...AATATTTTAATT/AATATTTTAATT...TTTAG|AGG | 1 | 1 | 88.048 |
17202735 | GT-AG | 0 | 1.000000099473604e-05 | 83 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 19 | 36725 | 36807 | Armadillidium vulgare 13347 | AAG|GTCAGTTTCT...TTTTTGTTAAAT/AAATGACTTACT...AATAG|GCG | 0 | 1 | 92.633 |
17202736 | GT-AG | 0 | 1.000000099473604e-05 | 289 | rna-gnl|WGS:SAUD|Avbf_03532-RA_mrna 3485052 | 20 | 36308 | 36596 | Armadillidium vulgare 13347 | AAG|GTAAGATATG...CGCTTTTTAAAA/GAAATTTTTACG...TTCAG|TCG | 2 | 1 | 96.824 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);