WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 34796212

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
196000764	GT-AG	1.2831399213139508e-05	919	rna-XM_043860827.1 34796212	1	28810515	28811433	Telopea speciosissima 54955	CAG\|GTACATACAT...GAGCCCGTAATT/TGTGTTCTGAGC...TACAG\|CAG	1	1	38.98
196000765	GT-AG	1.000000099473604e-05	294	rna-XM_043860827.1 34796212	2	28809881	28810174	Telopea speciosissima 54955	AAG\|GTAGGATGCC...AATGCCTTCATA/AATGCCTTCATA...TTCAG\|GTT	2	1	46.489
196000766	GC-AG	1.000000099473604e-05	307	rna-XM_043860827.1 34796212	3	28808760	28809066	Telopea speciosissima 54955	GAG\|GCATGAATCT...TTGTTCTTTTCC/TTGCTATTCATG...AACAG\|CTT	0	1	64.466
196000767	GT-AG	1.000000099473604e-05	483	rna-XM_043860827.1 34796212	4	28808153	28808635	Telopea speciosissima 54955	ACG\|GTGAGTTTTT...GCAGTCTTACTC/TGCAGTCTTACT...GACAG\|GGG	1	1	67.204
196000768	GT-AG	0.016219478619061	5742	rna-XM_043860827.1 34796212	5	28802191	28807932	Telopea speciosissima 54955	CTG\|GTATGTTCTC...GATGCCTTACTG/TGATGCCTTACT...TGCAG\|GTA	2	1	72.063
196000769	GT-AG	1.000000099473604e-05	82	rna-XM_043860827.1 34796212	6	28801650	28801731	Telopea speciosissima 54955	CTG\|GTTAGTCTGA...TTCTCCTTCTTT/CATCTTTTCAGC...TGCAG\|GAC	2	1	82.2
196014320	GT-AG	0.0033432108811298	20324	rna-XM_043860827.1 34796212	7	28781020	28801343	Telopea speciosissima 54955	ACG\|GTAATCTGTG...TGGTTCTTATTC/TTGGTTCTTATT...ATCAG\|ATG		0	88.958

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);