WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 34796194

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
196000510	GT-AG	1.000000099473604e-05	2950	rna-XM_043868410.1 34796194	1	84205721	84208670	Telopea speciosissima 54955	CAG\|GTTGGCCAAT...AATTTCTTATTA/CAATTTCTTATT...TTCAG\|GTG	0	1	5.449
196000511	GT-AG	0.0001056148804858	3574	rna-XM_043868410.1 34796194	2	84201958	84205531	Telopea speciosissima 54955	GAA\|GTAAGCCCTT...TGAACTTTGAAT/TTGAAATTTACC...TTCAG\|GTG	0	1	9.908
196000512	GT-AG	1.000000099473604e-05	100	rna-XM_043868410.1 34796194	3	84201765	84201864	Telopea speciosissima 54955	GAG\|GTGAGGTGTT...TGAACCTTGATT/AATATCTTCACT...TACAG\|GTT	0	1	12.102
196000513	GT-AG	0.0002435888522324	83	rna-XM_043868410.1 34796194	4	84201499	84201581	Telopea speciosissima 54955	GAG\|GTATTTGCAT...CACTCTTTATTT/TTTATTTTGAAC...TGCAG\|GTG	0	1	16.419
196000514	GT-AG	1.000000099473604e-05	116	rna-XM_043868410.1 34796194	5	84201280	84201395	Telopea speciosissima 54955	CAG\|GTAGATATGG...CATTGCTTATTT/CCATTGCTTATT...TACAG\|CGG	1	1	18.849
196000515	GT-AG	7.554734237909475e-05	4936	rna-XM_043868410.1 34796194	6	84196158	84201093	Telopea speciosissima 54955	AAG\|GTATTTAAAT...CATTCTATATTT/GTTGTTATGATA...TGCAG\|GTA	1	1	23.237
196000516	GT-AG	1.000000099473604e-05	1521	rna-XM_043868410.1 34796194	7	84192118	84193638	Telopea speciosissima 54955	CCT\|GTAAGAAAAA...TAATTCCTAGCT/CCTCTGTTAACT...ATTAG\|AAG	0	1	82.661
196000517	GT-AG	1.000000099473604e-05	491	rna-XM_043868410.1 34796194	8	84191037	84191527	Telopea speciosissima 54955	TAG\|GTTAGTCTCA...ATTATCTTAACA/ATTATCTTAACA...GCCAG\|ATT	2	1	96.579

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);