WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 34753853

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
195793999	GT-AG	1.000000099473604e-05	7353	rna-XM_009984949.1 34753853	1	25548	32900	Tauraco erythrolophus 121530	TGG\|GTAAGAGATT...TCTAACTTAATA/AACAATCTAACT...TACAG\|ACG	1	1	11.308
195794000	GC-AG	1.000000099473604e-05	8461	rna-XM_009984949.1 34753853	2	16886	25346	Tauraco erythrolophus 121530	CAG\|GCCAGTACCT...TACTTTTTATTT/TTTTTATTTATG...TGCAG\|ATT	1	1	31.072
195794001	GT-AG	2.643324901571169e-05	3487	rna-XM_009984949.1 34753853	3	13360	16846	Tauraco erythrolophus 121530	AAG\|GTAATCATGT...TTTTTCTTCCCC/CTGTTCGTCATT...TGTAG\|AAA	1	1	34.907
195794002	GT-AG	0.000954490607252	1372	rna-XM_009984949.1 34753853	4	11784	13155	Tauraco erythrolophus 121530	TGT\|GTAAACAATG...GGTCCATTACCA/CGAATAGTCAAG...AATAG\|ATC	1	1	54.966
195794003	GT-AG	1.000000099473604e-05	485	rna-XM_009984949.1 34753853	5	11230	11714	Tauraco erythrolophus 121530	TTG\|GTAAGAATTC...CATCCCTTTTTT/TACGGTTTCATC...TTTAG\|TAA	1	1	61.75
195794004	GT-AG	1.000000099473604e-05	6815	rna-XM_009984949.1 34753853	6	4322	11136	Tauraco erythrolophus 121530	TTG\|GTAAGAGTTT...TTGTCTCTAACC/TTGTCTCTAACC...TCTAG\|AGC	1	1	70.895
195794005	GT-AG	1.000000099473604e-05	560	rna-XM_009984949.1 34753853	7	3579	4138	Tauraco erythrolophus 121530	AAG\|GTATGGGAAG...GATGTTTTAGTG/TCTTTCTTCATT...TTTAG\|GAT	1	1	88.889

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);