WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 34753787

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
195793414	GT-AG	0	1.000000099473604e-05	2016	rna-XM_009992825.1 34753787	1	244913	246928	Tauraco erythrolophus 121530	AAA\|GTGAGCAATG...GGATCTTTATCT/AGGATCTTTATC...TGCAG\|CGA	1	1	3.503
195793415	GT-AG	0	1.000000099473604e-05	23959	rna-XM_009992825.1 34753787	2	220864	244822	Tauraco erythrolophus 121530	AAG\|GTGAGTGTCT...AAGTCATTGATG/ATTGATGTCACA...CTCAG\|GTA	1	1	13.672
195793416	GT-AG	0	7.845067418423998e-05	39956	rna-XM_009992825.1 34753787	3	180793	220748	Tauraco erythrolophus 121530	CAG\|GTATGGTGTG...ATGTCCTTTGTT/TGTTTTTTCATG...TACAG\|GTG	2	1	26.667
195793417	GT-AG	0	1.000000099473604e-05	53743	rna-XM_009992825.1 34753787	4	126938	180680	Tauraco erythrolophus 121530	CCG\|GTAAGTGGGG...TATGATTTATCT/ATTTATCTCATG...AACAG\|AAG	0	1	39.322
195793418	GT-AG	0	0.0001125882755421	15677	rna-XM_009992825.1 34753787	5	111108	126784	Tauraco erythrolophus 121530	TAT\|GTAAGCAATG...ACTCCCTTCATG/ATTCCACTCATG...TGCAG\|TCC	0	1	56.61
195793419	GT-AG	1	99.99860311922065	74998	rna-XM_009992825.1 34753787	6	35947	110944	Tauraco erythrolophus 121530	CGT\|GTATCCTTTT...TGCTCCTTAATT/TTTATTTTTATT...CACAG\|ATA	1	1	75.028
195793420	GT-AG	0	1.000000099473604e-05	12933	rna-XM_009992825.1 34753787	7	22917	35849	Tauraco erythrolophus 121530	TAG\|GTAGGTCAGA...TTTACCATACCT/CAGCATTTTACC...GACAG\|GAA	2	1	85.989

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);