WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 34724193

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
195654218	GT-AG	1.000000099473604e-05	156	rna-XM_010532809.1 34724193	2	285567	285722	Tarenaya hassleriana 28532	AAG\|GTTGGTAGTT...CTGTTTTTATTT/ACTGTTTTTATT...GACAG\|GTT	0	1	51.951
195654219	GT-AG	1.000000099473604e-05	76	rna-XM_010532809.1 34724193	3	285950	286025	Tarenaya hassleriana 28532	TGG\|GTGAGGAGGC...TTGTCCTTTTTC/TTCAATCTTATG...TGCAG\|CGT	2	1	59.15
195654220	GT-AG	0.0012556910135806	216	rna-XM_010532809.1 34724193	4	286359	286574	Tarenaya hassleriana 28532	CAG\|GTACTTTTAG...CGATCGTTAATT/CATTTACTGAGA...TACAG\|CTC	2	1	69.711
195654221	GT-AG	0.0139826060576847	103	rna-XM_010532809.1 34724193	5	286822	286924	Tarenaya hassleriana 28532	CTG\|GTAGCATTTG...AGTTCTTTAAGT/CTGGCTCTAATC...ATCAG\|ATG	0	1	77.545
195654222	GT-AG	1.000000099473604e-05	82	rna-XM_010532809.1 34724193	6	287054	287135	Tarenaya hassleriana 28532	CAG\|GTGAGAACAC...GGTTTTTTATCG/AGGTTTTTTATC...TGTAG\|ATA	0	1	81.637
195654223	GT-AG	0.0001123412086856	134	rna-XM_010532809.1 34724193	7	287352	287485	Tarenaya hassleriana 28532	AAG\|GTACATTCTG...TAGATCTTTCCC/ACATCTGTCACG...TGCAG\|GTT	0	1	88.487
195654224	GT-AG	0.0013349092754171	402	rna-XM_010532809.1 34724193	8	287610	288011	Tarenaya hassleriana 28532	CGA\|GTACGTACCC...CTCTCTTTATCT/TCTCTCTTTATC...TGCAG\|ATG	1	1	92.42
195662863	GT-AG	1.000000099473604e-05	518	rna-XM_010532809.1 34724193	1	283395	283912	Tarenaya hassleriana 28532	CAG\|GTTCGTCTTA...TATTTCTTTGCT/GCTTTGTTAATA...CCTAG\|TCT		0	2.854

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);