WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 34724123

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
195653370	GT-AG	0.0027559949338594	476	rna-XM_010542923.2 34724123	1	6162284	6162759	Tarenaya hassleriana 28532	TCG\|GTAACTCGGC...TAATCTTTAGTT/TTTCATCTCATT...GGCAG\|GAG	0	1	3.542
195653371	GT-AG	0.0042939393744084	99	rna-XM_010542923.2 34724123	2	6159602	6159700	Tarenaya hassleriana 28532	GAG\|GTATTTTGGA...TCTTCTTCAATT/TTTTTTCTGATA...TTCAG\|CTC	0	1	62.193
195653372	GT-AG	1.000000099473604e-05	204	rna-XM_010542923.2 34724123	3	6159294	6159497	Tarenaya hassleriana 28532	TAG\|GTAGAACAGC...GTGTCCTTAAAT/GGTATTCTTATT...TACAG\|TGC	2	1	64.555
195653373	GT-AG	1.000000099473604e-05	247	rna-XM_010542923.2 34724123	4	6158977	6159223	Tarenaya hassleriana 28532	CAG\|GTAAGCACTT...GTTTTCTTTTCC/AGATATCTCATT...TGTAG\|CTT	0	1	66.144
195653374	GT-AG	1.000000099473604e-05	168	rna-XM_010542923.2 34724123	5	6157996	6158163	Tarenaya hassleriana 28532	AAG\|GTTCGTTATA...TTTTTCGTACTT/CTTTTTCGTACT...TGCAG\|GTA	0	1	84.605
195653375	GT-AG	0.0003884164096914	127	rna-XM_010542923.2 34724123	6	6157666	6157792	Tarenaya hassleriana 28532	AAG\|GTAAACTTTA...GTGTTTTTCTCC/GACAGGTTGAGC...TGCAG\|TGT	2	1	89.214
195653376	GT-AG	9.81722238823573e-05	67	rna-XM_010542923.2 34724123	7	6157475	6157541	Tarenaya hassleriana 28532	GAG\|GTATATACAT...ATATTTGTAAAT/ATATTTGTAAAT...GTCAG\|GGA	0	1	92.03
195653377	GT-AG	0.0057764307404507	91	rna-XM_010542923.2 34724123	8	6157177	6157267	Tarenaya hassleriana 28532	CAA\|GTATTTCTCT...TATCTATTATCT/TATTATCTAATC...TATAG\|GAA	0	1	96.73

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);