introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 34480582
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751658 | GT-AG | 0 | 1.000000099473604e-05 | 66 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 | 1 | 2152123 | 2152188 | Syncephalastrum racemosum 13706 | CCG|GTAATGCTAG...GACTACTTATTT/ATTTGTCTGACA...GTCAG|GTG | 2 | 1 | 7.674 |
193751659 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 | 2 | 2152033 | 2152083 | Syncephalastrum racemosum 13706 | AAA|GTAAGGAAGA...ATGGCCCTACTA/TGGAAACTGATA...AAAAG|GCA | 2 | 1 | 9.01 |
193751660 | GT-AG | 0 | 1.841584933962556e-05 | 74 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 | 3 | 2151853 | 2151926 | Syncephalastrum racemosum 13706 | GTG|GTACGTATAG...TGTGTATTGAAT/ATAGGACTCACT...TGTAG|CTC | 0 | 1 | 12.641 |
193751661 | GT-AG | 0 | 1.6041998771545426e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 | 4 | 2150967 | 2151024 | Syncephalastrum racemosum 13706 | GCG|GTAAGTTGAG...TTTATTTTATTA/ATTTATTTTATT...TTTAG|AGC | 0 | 1 | 41.007 |
193751662 | GT-AG | 0 | 2.3477098603539835e-05 | 75 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 | 5 | 2150549 | 2150623 | Syncephalastrum racemosum 13706 | ACC|GTAAGTCCTA...CACTCTTTGCTA/TCTTTGCTAAAT...TGTAG|TGC | 1 | 1 | 52.758 |
193751663 | GT-AG | 0 | 2.148474409232141e-05 | 66 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 | 6 | 2150422 | 2150487 | Syncephalastrum racemosum 13706 | CAA|GTAAGTTCTG...AAAAGTTTAATG/AAAAGTTTAATG...TGCAG|GCA | 2 | 1 | 54.848 |
193751664 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 | 7 | 2150220 | 2150291 | Syncephalastrum racemosum 13706 | CAG|GTAAATTGGG...CTCATCTTGTCT/CATCGACTCATC...ATTAG|GTG | 0 | 1 | 59.301 |
193751665 | GT-AG | 0 | 1.5098160192327472e-05 | 46 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 | 8 | 2150127 | 2150172 | Syncephalastrum racemosum 13706 | GCT|GTAAGTCAAC...AATTCCTTACGG/TAATTCCTTACG...TATAG|ACT | 2 | 1 | 60.911 |
193751666 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 | 9 | 2149823 | 2149875 | Syncephalastrum racemosum 13706 | ACG|GTAAGCAGAA...AAGGCATTGAAT/ATTGAATTGACT...TATAG|TAT | 1 | 1 | 69.51 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);