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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 34480582

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751658 GT-AG 0 1.000000099473604e-05 66 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 1 2152123 2152188 Syncephalastrum racemosum 13706 CCG|GTAATGCTAG...GACTACTTATTT/ATTTGTCTGACA...GTCAG|GTG 2 1 7.674
193751659 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 2 2152033 2152083 Syncephalastrum racemosum 13706 AAA|GTAAGGAAGA...ATGGCCCTACTA/TGGAAACTGATA...AAAAG|GCA 2 1 9.01
193751660 GT-AG 0 1.841584933962556e-05 74 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 3 2151853 2151926 Syncephalastrum racemosum 13706 GTG|GTACGTATAG...TGTGTATTGAAT/ATAGGACTCACT...TGTAG|CTC 0 1 12.641
193751661 GT-AG 0 1.6041998771545426e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 4 2150967 2151024 Syncephalastrum racemosum 13706 GCG|GTAAGTTGAG...TTTATTTTATTA/ATTTATTTTATT...TTTAG|AGC 0 1 41.007
193751662 GT-AG 0 2.3477098603539835e-05 75 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 5 2150549 2150623 Syncephalastrum racemosum 13706 ACC|GTAAGTCCTA...CACTCTTTGCTA/TCTTTGCTAAAT...TGTAG|TGC 1 1 52.758
193751663 GT-AG 0 2.148474409232141e-05 66 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 6 2150422 2150487 Syncephalastrum racemosum 13706 CAA|GTAAGTTCTG...AAAAGTTTAATG/AAAAGTTTAATG...TGCAG|GCA 2 1 54.848
193751664 GT-AG 0 1.000000099473604e-05 72 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 7 2150220 2150291 Syncephalastrum racemosum 13706 CAG|GTAAATTGGG...CTCATCTTGTCT/CATCGACTCATC...ATTAG|GTG 0 1 59.301
193751665 GT-AG 0 1.5098160192327472e-05 46 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 8 2150127 2150172 Syncephalastrum racemosum 13706 GCT|GTAAGTCAAC...AATTCCTTACGG/TAATTCCTTACG...TATAG|ACT 2 1 60.911
193751666 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA482456 34480582 9 2149823 2149875 Syncephalastrum racemosum 13706 ACG|GTAAGCAGAA...AAGGCATTGAAT/ATTGAATTGACT...TATAG|TAT 1 1 69.51

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 28.95ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)