introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 34480581
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Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751646 | GT-AG | 0 | 6.615414649268073e-05 | 67 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA559254 34480581 | 1 | 409327 | 409393 | Syncephalastrum racemosum 13706 | ATG|GTACATAATC...ATGGTCTAAATT/TGTTTACTCATT...CTCAG|TTT | 1 | 1 | 4.038 |
193751647 | GT-AG | 0 | 1.4337715216871173e-05 | 68 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA559254 34480581 | 2 | 409151 | 409218 | Syncephalastrum racemosum 13706 | ACT|GTAATTAGAA...CACACTTTCACG/AAGGCACTCACA...ATTAG|GGA | 1 | 1 | 7.734 |
193751648 | GC-AG | 0 | 1.000000099473604e-05 | 59 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA559254 34480581 | 3 | 408998 | 409056 | Syncephalastrum racemosum 13706 | CAG|GCAAGTCTGC...TTGCTCATATAA/AGTTTGCTCATA...TACAG|AAA | 2 | 1 | 10.951 |
193751649 | GT-AG | 0 | 1.000000099473604e-05 | 71 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA559254 34480581 | 4 | 408626 | 408696 | Syncephalastrum racemosum 13706 | AGG|GTAAGACAAA...TTTACCTTGTTG/CTTATATTTACC...TTTAG|AGA | 0 | 1 | 21.253 |
193751650 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA559254 34480581 | 5 | 408479 | 408528 | Syncephalastrum racemosum 13706 | ATG|GTAAATCAGG...AATTCCCCAACG/CCAACGCTCATA...GTTAG|ACG | 1 | 1 | 24.572 |
193751651 | GC-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA559254 34480581 | 6 | 408347 | 408404 | Syncephalastrum racemosum 13706 | CAG|GCAAGTCAAT...TTGAGATTGACC/TTGAGATTGACC...CTTAG|GTT | 0 | 1 | 27.105 |
193751652 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA559254 34480581 | 7 | 407870 | 407920 | Syncephalastrum racemosum 13706 | AGT|GTAAGAGCGA...AGATTCTCATTG/GAGATTCTCATT...TTTAG|GGC | 0 | 1 | 41.684 |
193751653 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA559254 34480581 | 8 | 407468 | 407529 | Syncephalastrum racemosum 13706 | AAC|GTAAGTGGAT...AATTTCTTCGTT/AGTCATCTGATG...TCCAG|TGC | 1 | 1 | 53.32 |
193751654 | GT-AG | 0 | 8.834858217795355e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA559254 34480581 | 9 | 407140 | 407190 | Syncephalastrum racemosum 13706 | CTT|GTAAGTCATA...ATGCTTTTAACG/ATGCTTTTAACG...TTTAG|AAA | 2 | 1 | 62.799 |
193751655 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA559254 34480581 | 10 | 406935 | 406992 | Syncephalastrum racemosum 13706 | CAG|GTACAGTGAT...AAGTTCACAACT/CAAAAGCTCATC...TATAG|ACT | 2 | 1 | 67.83 |
193751656 | GT-AG | 0 | 3.706233524793018e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA559254 34480581 | 11 | 406345 | 406404 | Syncephalastrum racemosum 13706 | GAT|GTAAGTTGCT...TTCTCCTTCTAC/CTCTGGCTCACA...TTTAG|CGA | 1 | 1 | 85.969 |
193751657 | GT-AG | 0 | 6.331464701128504e-05 | 63 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA559254 34480581 | 12 | 406023 | 406085 | Syncephalastrum racemosum 13706 | AAA|GTAAATTCGA...CTTTCCTTTTTC/AAGACACTGACG...TGTAG|TGC | 2 | 1 | 94.832 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);