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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 34480580

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751636 GT-AG 0 1.000000099473604e-05 73 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA429523 34480580 1 951203 951275 Syncephalastrum racemosum 13706 TGG|GTAAGTAAAA...GCCATCTTATTC/AGCCATCTTATT...TTTAG|GCG 1 1 6.81
193751637 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA429523 34480580 2 950705 950760 Syncephalastrum racemosum 13706 CAA|GTAAGGATCT...GGTCTCTTACAT/AGGTCTCTTACA...GTCAG|GGT 2 1 21.937
193751638 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA429523 34480580 3 950485 950537 Syncephalastrum racemosum 13706 AGG|GTAAGTGCAT...TGTTCCTCACAT/ATGTTCCTCACA...CCTAG|CTT 1 1 27.652
193751639 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA429523 34480580 4 950169 950219 Syncephalastrum racemosum 13706 GAG|GTAGAGCTCA...ATTGCCTAATCA/CATTGCCTAATC...CATAG|TGA 2 1 36.721
193751640 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA429523 34480580 5 950006 950058 Syncephalastrum racemosum 13706 CTG|GTAGGGATAA...GAGTTATTAAGC/GAGTTATTAAGC...TGTAG|GCT 1 1 40.486
193751641 GT-AG 0 0.0001476548651156 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA429523 34480580 6 949854 949903 Syncephalastrum racemosum 13706 TTT|GTATGTGCAA...ATGTTCTAGAGG/AGAGGACTGACG...TATAG|TCG 1 1 43.977
193751642 GT-AG 0 1.000000099473604e-05 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA429523 34480580 7 949460 949506 Syncephalastrum racemosum 13706 GAA|GTAAGTATGC...TCGACTGTGACT/CTGTGACTGAGA...ACTAG|ATC 0 1 55.852
193751643 GT-AG 0 1.000000099473604e-05 140 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA429523 34480580 8 948928 949067 Syncephalastrum racemosum 13706 AGG|GTAAGAAACA...GCGGTCTGAACT/TGCGGTCTGAAC...ATCAG|TGT 2 1 69.268
193751644 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA429523 34480580 9 948739 948792 Syncephalastrum racemosum 13706 AAG|GTAAGTGAAA...CTAGACTTGATG/TTGATGCTAAAC...AACAG|AGG 2 1 73.888
193751645 GT-AG 0 1.000000099473604e-05 67 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA429523 34480580 10 948188 948254 Syncephalastrum racemosum 13706 AGG|GTGAGTACAC...ACTCGTTTGACA/AAGATATTCAGT...TGTAG|CTC 0 1 90.452

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.16ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)