introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
14 rows where transcript_id = 34480577
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Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751616 | GT-AG | 0 | 1.000000099473604e-05 | 283 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 | 1 | 4071300 | 4071582 | Syncephalastrum racemosum 13706 | CAG|GTAAGTCAAG...ACACTCCTAATA/AAATGACTCATC...CTTAG|GCC | 0 | 1 | 2.335 |
193751617 | GT-AG | 0 | 4.8697972832516073e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 | 2 | 4071159 | 4071216 | Syncephalastrum racemosum 13706 | GGC|GTAGGTCAAC...TCATCCTTTACT/CCTTGTCTCATC...TGTAG|TGT | 2 | 1 | 5.144 |
193751618 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 | 3 | 4071051 | 4071101 | Syncephalastrum racemosum 13706 | TCA|GTAAGTAGAA...AGGGCTTCAGAC/CGATGGCTTACG...ATTAG|GTA | 2 | 1 | 7.073 |
193751619 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 | 4 | 4070889 | 4070943 | Syncephalastrum racemosum 13706 | CAT|GTAAGTGAAA...CGTGCATTATAT/AGCGACCTGATG...AATAG|TCA | 1 | 1 | 10.694 |
193751620 | GT-AG | 0 | 8.837925611781622e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 | 5 | 4070373 | 4070424 | Syncephalastrum racemosum 13706 | GAT|GTAAGTTATC...CGTGGTTTGACG/CGTGGTTTGACG...ATTAG|ATC | 0 | 1 | 26.396 |
193751621 | GT-AG | 0 | 1.000000099473604e-05 | 66 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 | 6 | 4070220 | 4070285 | Syncephalastrum racemosum 13706 | TTG|GTAAGTGGAA...CATGCCAAAACG/GAGAAGCTCATG...TCTAG|TCG | 0 | 1 | 29.34 |
193751622 | GT-AG | 0 | 1.923912967156428e-05 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 | 7 | 4070062 | 4070116 | Syncephalastrum racemosum 13706 | AGT|GTAAGTAAAG...TCGTTCTTACCA/GTCGTTCTTACC...CATAG|TGG | 1 | 1 | 32.826 |
193751623 | GT-AG | 0 | 0.0002125146917912 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 | 8 | 4069896 | 4069945 | Syncephalastrum racemosum 13706 | ATA|GTAAGTTCTG...TGCTCCTTTACT/CCTTTACTTATG...TGTAG|TTC | 0 | 1 | 36.751 |
193751624 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 | 9 | 4069673 | 4069727 | Syncephalastrum racemosum 13706 | AAG|GTAACAACTG...GTGCTGATGATT/GGAGTGCTGATG...GATAG|AAT | 0 | 1 | 42.437 |
193751625 | GT-AG | 0 | 1.1978654937323144e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 | 10 | 4069365 | 4069413 | Syncephalastrum racemosum 13706 | CCA|GTAAGTCCTG...GTGCTTTTCATT/TGTTTTCTCACA...TGCAG|ATA | 1 | 1 | 51.201 |
193751626 | GT-AG | 0 | 1.000000099473604e-05 | 48 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 | 11 | 4068777 | 4068824 | Syncephalastrum racemosum 13706 | AGG|GTAAGATAGA...TTTTACTTAACC/CTTTTACTTAAC...GGTAG|GAT | 1 | 1 | 69.475 |
193751627 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 | 12 | 4068447 | 4068498 | Syncephalastrum racemosum 13706 | AAG|GTAAATAGCA...GGTATCTAAAAC/AGGTATCTAAAA...TGTAG|CCT | 0 | 1 | 78.883 |
193751628 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 | 13 | 4067971 | 4068026 | Syncephalastrum racemosum 13706 | CTG|GTAAAAAAAA...GAGATAGTAACT/TAGTAACTAATC...AATAG|GTC | 0 | 1 | 93.096 |
193751629 | GC-AG | 0 | 1.000000099473604e-05 | 77 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 | 14 | 4067717 | 4067793 | Syncephalastrum racemosum 13706 | CAG|GCAAGTTTTA...TTGACATTATTT/CATATATTGACA...TATAG|TCA | 0 | 1 | 99.086 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);