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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

14 rows where transcript_id = 34480577

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Suggested facets: dinucleotide_pair, score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751616 GT-AG 0 1.000000099473604e-05 283 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 1 4071300 4071582 Syncephalastrum racemosum 13706 CAG|GTAAGTCAAG...ACACTCCTAATA/AAATGACTCATC...CTTAG|GCC 0 1 2.335
193751617 GT-AG 0 4.8697972832516073e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 2 4071159 4071216 Syncephalastrum racemosum 13706 GGC|GTAGGTCAAC...TCATCCTTTACT/CCTTGTCTCATC...TGTAG|TGT 2 1 5.144
193751618 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 3 4071051 4071101 Syncephalastrum racemosum 13706 TCA|GTAAGTAGAA...AGGGCTTCAGAC/CGATGGCTTACG...ATTAG|GTA 2 1 7.073
193751619 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 4 4070889 4070943 Syncephalastrum racemosum 13706 CAT|GTAAGTGAAA...CGTGCATTATAT/AGCGACCTGATG...AATAG|TCA 1 1 10.694
193751620 GT-AG 0 8.837925611781622e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 5 4070373 4070424 Syncephalastrum racemosum 13706 GAT|GTAAGTTATC...CGTGGTTTGACG/CGTGGTTTGACG...ATTAG|ATC 0 1 26.396
193751621 GT-AG 0 1.000000099473604e-05 66 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 6 4070220 4070285 Syncephalastrum racemosum 13706 TTG|GTAAGTGGAA...CATGCCAAAACG/GAGAAGCTCATG...TCTAG|TCG 0 1 29.34
193751622 GT-AG 0 1.923912967156428e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 7 4070062 4070116 Syncephalastrum racemosum 13706 AGT|GTAAGTAAAG...TCGTTCTTACCA/GTCGTTCTTACC...CATAG|TGG 1 1 32.826
193751623 GT-AG 0 0.0002125146917912 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 8 4069896 4069945 Syncephalastrum racemosum 13706 ATA|GTAAGTTCTG...TGCTCCTTTACT/CCTTTACTTATG...TGTAG|TTC 0 1 36.751
193751624 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 9 4069673 4069727 Syncephalastrum racemosum 13706 AAG|GTAACAACTG...GTGCTGATGATT/GGAGTGCTGATG...GATAG|AAT 0 1 42.437
193751625 GT-AG 0 1.1978654937323144e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 10 4069365 4069413 Syncephalastrum racemosum 13706 CCA|GTAAGTCCTG...GTGCTTTTCATT/TGTTTTCTCACA...TGCAG|ATA 1 1 51.201
193751626 GT-AG 0 1.000000099473604e-05 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 11 4068777 4068824 Syncephalastrum racemosum 13706 AGG|GTAAGATAGA...TTTTACTTAACC/CTTTTACTTAAC...GGTAG|GAT 1 1 69.475
193751627 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 12 4068447 4068498 Syncephalastrum racemosum 13706 AAG|GTAAATAGCA...GGTATCTAAAAC/AGGTATCTAAAA...TGTAG|CCT 0 1 78.883
193751628 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 13 4067971 4068026 Syncephalastrum racemosum 13706 CTG|GTAAAAAAAA...GAGATAGTAACT/TAGTAACTAATC...AATAG|GTC 0 1 93.096
193751629 GC-AG 0 1.000000099473604e-05 77 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA60920 34480577 14 4067717 4067793 Syncephalastrum racemosum 13706 CAG|GCAAGTTTTA...TTGACATTATTT/CATATATTGACA...TATAG|TCA 0 1 99.086

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 49.351ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)