introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
14 rows where transcript_id = 34480576
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751602 | GT-AG | 0 | 0.4772678248508584 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 | 1 | 336144 | 336194 | Syncephalastrum racemosum 13706 | CCC|GTATGTTTTC...CCGTGTTTAACT/CCGTGTTTAACT...TCCAG|TCA | 0 | 1 | 3.34 |
193751603 | GT-AG | 0 | 1.000000099473604e-05 | 47 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 | 2 | 336258 | 336304 | Syncephalastrum racemosum 13706 | ATG|GTGAGTCGAC...TTTCTTTTATTC/CTTTTATTCATT...GGCAG|TGC | 0 | 1 | 5.466 |
193751604 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 | 3 | 336705 | 336760 | Syncephalastrum racemosum 13706 | ATG|GTAAAGTTTT...ACCTTTTTGCTA/TTTTTGCTAAAG...TGTAG|ATC | 1 | 1 | 18.961 |
193751605 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 | 4 | 336822 | 336871 | Syncephalastrum racemosum 13706 | TGC|GTAAGTGCGA...AATCGATTGACC/AATCGATTGACC...GATAG|GAA | 2 | 1 | 21.019 |
193751606 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 | 5 | 337009 | 337072 | Syncephalastrum racemosum 13706 | GAG|GTAAGCGTGA...TTAGACTTATTC/TTTCGTTTCATT...CTTAG|CCG | 1 | 1 | 25.641 |
193751607 | GT-AG | 0 | 0.0001091372897205 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 | 6 | 337481 | 337530 | Syncephalastrum racemosum 13706 | TCA|GTAAGCGATA...ACTTGCTTATCA/GACTTGCTTATC...CCTAG|CCC | 1 | 1 | 39.406 |
193751608 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 | 7 | 337802 | 337851 | Syncephalastrum racemosum 13706 | AAG|GTATGATAAA...CTCCCATTAAGC/CTCCCATTAAGC...TATAG|GCC | 2 | 1 | 48.549 |
193751609 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 | 8 | 337955 | 338014 | Syncephalastrum racemosum 13706 | GAC|GTAAGTGGGC...TATGTCAAGACT/TCAAGACTCAGA...CCTAG|TGT | 0 | 1 | 52.024 |
193751610 | GT-AG | 0 | 0.0022886638322513 | 48 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 | 9 | 338082 | 338129 | Syncephalastrum racemosum 13706 | GCC|GTAAGTTTAC...TTTTTTTTAAAA/GTATGTCTCATT...AATAG|GCC | 1 | 1 | 54.285 |
193751611 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 | 10 | 338395 | 338449 | Syncephalastrum racemosum 13706 | CAA|GTAAGGCAAA...ACATCCTTTCTA/TCTATACTCATG...AGTAG|ACT | 2 | 1 | 63.225 |
193751612 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 | 11 | 338566 | 338629 | Syncephalastrum racemosum 13706 | ATG|GTAAGCCCAG...CCCCTGTTGAAT/GTTAGACTGACC...AATAG|ATC | 1 | 1 | 67.139 |
193751613 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 | 12 | 338872 | 338923 | Syncephalastrum racemosum 13706 | CAA|GTAAGACCTG...TCTCTTTTATTT/CTTTTATTTATC...GATAG|ATA | 0 | 1 | 75.304 |
193751614 | GT-AG | 0 | 6.170220379268993e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 | 13 | 339386 | 339443 | Syncephalastrum racemosum 13706 | AAG|GTAACATCAT...ATTCCCTTTTCG/CACAGATTCACA...TTTAG|CCT | 0 | 1 | 90.891 |
193751615 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 | 14 | 339562 | 339617 | Syncephalastrum racemosum 13706 | AAG|GTAAGGAGAG...GGTTTCATAGTG/ACAGGTTTCATA...GATAG|CCG | 1 | 1 | 94.872 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);