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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

14 rows where transcript_id = 34480576

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751602 GT-AG 0 0.4772678248508584 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 1 336144 336194 Syncephalastrum racemosum 13706 CCC|GTATGTTTTC...CCGTGTTTAACT/CCGTGTTTAACT...TCCAG|TCA 0 1 3.34
193751603 GT-AG 0 1.000000099473604e-05 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 2 336258 336304 Syncephalastrum racemosum 13706 ATG|GTGAGTCGAC...TTTCTTTTATTC/CTTTTATTCATT...GGCAG|TGC 0 1 5.466
193751604 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 3 336705 336760 Syncephalastrum racemosum 13706 ATG|GTAAAGTTTT...ACCTTTTTGCTA/TTTTTGCTAAAG...TGTAG|ATC 1 1 18.961
193751605 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 4 336822 336871 Syncephalastrum racemosum 13706 TGC|GTAAGTGCGA...AATCGATTGACC/AATCGATTGACC...GATAG|GAA 2 1 21.019
193751606 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 5 337009 337072 Syncephalastrum racemosum 13706 GAG|GTAAGCGTGA...TTAGACTTATTC/TTTCGTTTCATT...CTTAG|CCG 1 1 25.641
193751607 GT-AG 0 0.0001091372897205 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 6 337481 337530 Syncephalastrum racemosum 13706 TCA|GTAAGCGATA...ACTTGCTTATCA/GACTTGCTTATC...CCTAG|CCC 1 1 39.406
193751608 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 7 337802 337851 Syncephalastrum racemosum 13706 AAG|GTATGATAAA...CTCCCATTAAGC/CTCCCATTAAGC...TATAG|GCC 2 1 48.549
193751609 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 8 337955 338014 Syncephalastrum racemosum 13706 GAC|GTAAGTGGGC...TATGTCAAGACT/TCAAGACTCAGA...CCTAG|TGT 0 1 52.024
193751610 GT-AG 0 0.0022886638322513 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 9 338082 338129 Syncephalastrum racemosum 13706 GCC|GTAAGTTTAC...TTTTTTTTAAAA/GTATGTCTCATT...AATAG|GCC 1 1 54.285
193751611 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 10 338395 338449 Syncephalastrum racemosum 13706 CAA|GTAAGGCAAA...ACATCCTTTCTA/TCTATACTCATG...AGTAG|ACT 2 1 63.225
193751612 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 11 338566 338629 Syncephalastrum racemosum 13706 ATG|GTAAGCCCAG...CCCCTGTTGAAT/GTTAGACTGACC...AATAG|ATC 1 1 67.139
193751613 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 12 338872 338923 Syncephalastrum racemosum 13706 CAA|GTAAGACCTG...TCTCTTTTATTT/CTTTTATTTATC...GATAG|ATA 0 1 75.304
193751614 GT-AG 0 6.170220379268993e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 13 339386 339443 Syncephalastrum racemosum 13706 AAG|GTAACATCAT...ATTCCCTTTTCG/CACAGATTCACA...TTTAG|CCT 0 1 90.891
193751615 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481260 34480576 14 339562 339617 Syncephalastrum racemosum 13706 AAG|GTAAGGAGAG...GGTTTCATAGTG/ACAGGTTTCATA...GATAG|CCG 1 1 94.872

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 25.456ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)