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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

14 rows where transcript_id = 34480574

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751581 GT-AG 0 2.9664323548750216e-05 94 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 1 850192 850285 Syncephalastrum racemosum 13706 GAG|GTATAAAAAT...TCGGCTTTATTC/CTCGGCTTTATT...CATAG|TCT 0 1 3.119
193751582 GT-AG 0 0.1686265082251257 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 2 850460 850515 Syncephalastrum racemosum 13706 GGT|GTATGTCTTG...TTCATCTTAAAC/ATGACGCTCATT...GTTAG|GAA 0 1 8.954
193751583 GT-AG 0 0.0003274371033072 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 3 850790 850845 Syncephalastrum racemosum 13706 CAG|GTACACATAT...ATGTTCTGATCC/TATGTTCTGATC...AATAG|GTC 1 1 18.142
193751584 GT-AG 0 0.000555524657939 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 4 850944 850996 Syncephalastrum racemosum 13706 GTC|GTACGTGTTT...ATGTTTTTTTCC/AGAGAATTGATG...GTTAG|ACG 0 1 21.429
193751585 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 5 851393 851446 Syncephalastrum racemosum 13706 AAG|GTAAGGATGA...AAATCCGTATAT/ATATGTCTGACG...CGAAG|CTC 0 1 34.708
193751586 GT-AG 0 0.0004839369489911 66 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 6 851602 851667 Syncephalastrum racemosum 13706 TTC|GTAAGTTCTC...TGCGTTTTACCG/CTGCGTTTTACC...TGCAG|TAA 2 1 39.906
193751587 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 7 851747 851795 Syncephalastrum racemosum 13706 AAG|GTAACGATAA...TATGTGCTGATG/TATGTGCTGATG...TCCAG|TTT 0 1 42.555
193751588 GT-AG 0 9.363675311041768e-05 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 8 851943 852001 Syncephalastrum racemosum 13706 AAG|GTTTGTTCTT...TTTCCCTTATGG/TTTTCCCTTATG...TTTAG|ACC 0 1 47.485
193751589 GT-AG 0 1.8037526051129225e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 9 852112 852160 Syncephalastrum racemosum 13706 CTT|GTAAGTCGAA...TGTTACTTATCT/TTGTTACTTATC...ACTAG|ATA 2 1 51.174
193751590 GT-AG 0 1.000000099473604e-05 63 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 10 852240 852302 Syncephalastrum racemosum 13706 GAA|GTAAGGAAAA...TTTTCTTTATTC/CTTTTCTTTATT...TATAG|GCC 0 1 53.823
193751591 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 11 853073 853122 Syncephalastrum racemosum 13706 TGG|GTAAGTATTC...AGTGTCTCGACC/CTCGACCTGACC...GATAG|TCC 2 1 79.645
193751592 GT-AG 0 4.299711071856833e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 12 853358 853411 Syncephalastrum racemosum 13706 CAG|GTATGTGAAC...GCTTCCTTTACT/CTTTACTTCATG...TATAG|AAC 0 1 87.525
193751593 GT-AG 0 1.000000099473604e-05 63 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 13 853486 853548 Syncephalastrum racemosum 13706 AAG|GTAGATGAAA...TACTCATTGACC/AGAGTACTCATT...CATAG|CGC 2 1 90.007
193751594 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 14 853763 853815 Syncephalastrum racemosum 13706 CAG|GTAAATAAAA...AAAGTGCTGACG/AAAGTGCTGACG...TCTAG|CTG 0 1 97.183

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.405ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)