introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
14 rows where transcript_id = 34480574
This data as json, CSV (advanced)
Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751581 | GT-AG | 0 | 2.9664323548750216e-05 | 94 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 | 1 | 850192 | 850285 | Syncephalastrum racemosum 13706 | GAG|GTATAAAAAT...TCGGCTTTATTC/CTCGGCTTTATT...CATAG|TCT | 0 | 1 | 3.119 |
193751582 | GT-AG | 0 | 0.1686265082251257 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 | 2 | 850460 | 850515 | Syncephalastrum racemosum 13706 | GGT|GTATGTCTTG...TTCATCTTAAAC/ATGACGCTCATT...GTTAG|GAA | 0 | 1 | 8.954 |
193751583 | GT-AG | 0 | 0.0003274371033072 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 | 3 | 850790 | 850845 | Syncephalastrum racemosum 13706 | CAG|GTACACATAT...ATGTTCTGATCC/TATGTTCTGATC...AATAG|GTC | 1 | 1 | 18.142 |
193751584 | GT-AG | 0 | 0.000555524657939 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 | 4 | 850944 | 850996 | Syncephalastrum racemosum 13706 | GTC|GTACGTGTTT...ATGTTTTTTTCC/AGAGAATTGATG...GTTAG|ACG | 0 | 1 | 21.429 |
193751585 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 | 5 | 851393 | 851446 | Syncephalastrum racemosum 13706 | AAG|GTAAGGATGA...AAATCCGTATAT/ATATGTCTGACG...CGAAG|CTC | 0 | 1 | 34.708 |
193751586 | GT-AG | 0 | 0.0004839369489911 | 66 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 | 6 | 851602 | 851667 | Syncephalastrum racemosum 13706 | TTC|GTAAGTTCTC...TGCGTTTTACCG/CTGCGTTTTACC...TGCAG|TAA | 2 | 1 | 39.906 |
193751587 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 | 7 | 851747 | 851795 | Syncephalastrum racemosum 13706 | AAG|GTAACGATAA...TATGTGCTGATG/TATGTGCTGATG...TCCAG|TTT | 0 | 1 | 42.555 |
193751588 | GT-AG | 0 | 9.363675311041768e-05 | 59 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 | 8 | 851943 | 852001 | Syncephalastrum racemosum 13706 | AAG|GTTTGTTCTT...TTTCCCTTATGG/TTTTCCCTTATG...TTTAG|ACC | 0 | 1 | 47.485 |
193751589 | GT-AG | 0 | 1.8037526051129225e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 | 9 | 852112 | 852160 | Syncephalastrum racemosum 13706 | CTT|GTAAGTCGAA...TGTTACTTATCT/TTGTTACTTATC...ACTAG|ATA | 2 | 1 | 51.174 |
193751590 | GT-AG | 0 | 1.000000099473604e-05 | 63 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 | 10 | 852240 | 852302 | Syncephalastrum racemosum 13706 | GAA|GTAAGGAAAA...TTTTCTTTATTC/CTTTTCTTTATT...TATAG|GCC | 0 | 1 | 53.823 |
193751591 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 | 11 | 853073 | 853122 | Syncephalastrum racemosum 13706 | TGG|GTAAGTATTC...AGTGTCTCGACC/CTCGACCTGACC...GATAG|TCC | 2 | 1 | 79.645 |
193751592 | GT-AG | 0 | 4.299711071856833e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 | 12 | 853358 | 853411 | Syncephalastrum racemosum 13706 | CAG|GTATGTGAAC...GCTTCCTTTACT/CTTTACTTCATG...TATAG|AAC | 0 | 1 | 87.525 |
193751593 | GT-AG | 0 | 1.000000099473604e-05 | 63 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 | 13 | 853486 | 853548 | Syncephalastrum racemosum 13706 | AAG|GTAGATGAAA...TACTCATTGACC/AGAGTACTCATT...CATAG|CGC | 2 | 1 | 90.007 |
193751594 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465525 34480574 | 14 | 853763 | 853815 | Syncephalastrum racemosum 13706 | CAG|GTAAATAAAA...AAAGTGCTGACG/AAAGTGCTGACG...TCTAG|CTG | 0 | 1 | 97.183 |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);