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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

19 rows where transcript_id = 34480573

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751562 GT-AG 0 0.3513186303743231 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 1 3730211 3730264 Syncephalastrum racemosum 13706 AAA|GTATGTTTTA...ATCATCTTAATT/GCTGTCCTCATC...TTCAG|GCT 1 1 2.75
193751563 GT-AG 0 0.0007496246531646 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 2 3730119 3730173 Syncephalastrum racemosum 13706 GCA|GTACGTTGTA...AATACCAAAGCT/CCAAAGCTCAAA...TTTAG|TTT 2 1 3.991
193751564 GT-AG 0 0.0190087198405772 72 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 3 3729931 3730002 Syncephalastrum racemosum 13706 ACA|GTACGTCTCC...TTATCCTTATTC/ATTATCCTTATT...TATAG|CGA 1 1 7.881
193751565 GT-AG 0 0.0027721835589179 37 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 4 3729757 3729793 Syncephalastrum racemosum 13706 GGT|GTAAGCATTT...ATATTCATGACG/CCTATATTCATG...CACAG|ACA 0 1 12.475
193751566 GT-AG 0 1.000000099473604e-05 69 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 5 3729661 3729729 Syncephalastrum racemosum 13706 CAG|GTTGTTTACA...AATAGTTTGACG/CTAAAATTGACC...TGCAG|GGT 0 1 13.38
193751567 GT-AG 0 1.0486254839641975 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 6 3729480 3729530 Syncephalastrum racemosum 13706 AGA|GTATGTTTGA...AATGCCTTGACT/CCTTGACTCATT...CGTAG|TCA 1 1 17.74
193751568 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 7 3729159 3729210 Syncephalastrum racemosum 13706 CAT|GTAAGCCGCT...GCTAACTCATCC/AGCTAACTCATC...AATAG|GAA 0 1 26.761
193751569 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 8 3728997 3729049 Syncephalastrum racemosum 13706 CAG|GTAAAGTCGG...CTCGTCTGATTC/GCTCGTCTGATT...ACAAG|ATG 1 1 30.416
193751570 GT-AG 0 0.0002865760769034 45 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 9 3728712 3728756 Syncephalastrum racemosum 13706 CTG|GTAATCCTCA...TTTTCTGTGATG/TTTTCTGTGATG...TCTAG|AAA 1 1 38.464
193751571 GT-AG 0 1.000000099473604e-05 46 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 10 3728545 3728590 Syncephalastrum racemosum 13706 AAA|GTAAGTTCAT...TGCCCTCCAGCT/CTCCAGCTAACC...TCCAG|ATG 2 1 42.522
193751572 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 11 3728213 3728271 Syncephalastrum racemosum 13706 CGT|GTTGTAAGTT...TGTGCGCTAACT/TGTGCGCTAACT...TTTAG|CAA 2 1 51.677
193751573 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 12 3728091 3728141 Syncephalastrum racemosum 13706 ATC|GTAAGTCTGC...TACGTATAAACT/TATAAACTGATC...GCCAG|ACG 1 1 54.058
193751574 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 13 3727725 3727774 Syncephalastrum racemosum 13706 GAG|GTATGAAAGA...TTCGTTCTAACG/TTCGTTCTAACG...CGTAG|AGT 2 1 64.655
193751575 GT-AG 0 1.000000099473604e-05 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 14 3727614 3727660 Syncephalastrum racemosum 13706 AGT|GTAAGTGCTA...TTGTGCTAAACG/ATTGTGCTAAAC...TACAG|ATG 0 1 66.801
193751576 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 15 3727394 3727450 Syncephalastrum racemosum 13706 CAT|GTGAGTATCG...GAATTCCTGATA/ATTGGGCTTACA...CTTAG|TGT 1 1 72.267
193751577 GT-AG 0 1.000000099473604e-05 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 16 3727251 3727298 Syncephalastrum racemosum 13706 ATG|GTAAGGTAAC...CCTGCCGCAATA/CGCGCACTCATC...TGTAG|CCG 0 1 75.453
193751578 GT-AG 0 1.000000099473604e-05 46 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 17 3727127 3727172 Syncephalastrum racemosum 13706 ATT|GTAAGTGCCT...AATGCATAAACT/CATAAACTCATC...TTCAG|GGC 0 1 78.068
193751579 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 18 3726779 3726832 Syncephalastrum racemosum 13706 GAG|GTAGGGCAGA...TCAGGTTTATAT/GAGAGACTGACT...GTTAG|ATG 0 1 87.928
193751580 GT-AG 0 0.0026815514663574 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 19 3726550 3726613 Syncephalastrum racemosum 13706 CAG|GTATATTCTA...CTAGCCTAATCA/GTCTTGCTGACT...AATAG|GCG 0 1 93.461

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 63.599ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)