introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
19 rows where transcript_id = 34480573
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751562 | GT-AG | 0 | 0.3513186303743231 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 1 | 3730211 | 3730264 | Syncephalastrum racemosum 13706 | AAA|GTATGTTTTA...ATCATCTTAATT/GCTGTCCTCATC...TTCAG|GCT | 1 | 1 | 2.75 |
193751563 | GT-AG | 0 | 0.0007496246531646 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 2 | 3730119 | 3730173 | Syncephalastrum racemosum 13706 | GCA|GTACGTTGTA...AATACCAAAGCT/CCAAAGCTCAAA...TTTAG|TTT | 2 | 1 | 3.991 |
193751564 | GT-AG | 0 | 0.0190087198405772 | 72 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 3 | 3729931 | 3730002 | Syncephalastrum racemosum 13706 | ACA|GTACGTCTCC...TTATCCTTATTC/ATTATCCTTATT...TATAG|CGA | 1 | 1 | 7.881 |
193751565 | GT-AG | 0 | 0.0027721835589179 | 37 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 4 | 3729757 | 3729793 | Syncephalastrum racemosum 13706 | GGT|GTAAGCATTT...ATATTCATGACG/CCTATATTCATG...CACAG|ACA | 0 | 1 | 12.475 |
193751566 | GT-AG | 0 | 1.000000099473604e-05 | 69 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 5 | 3729661 | 3729729 | Syncephalastrum racemosum 13706 | CAG|GTTGTTTACA...AATAGTTTGACG/CTAAAATTGACC...TGCAG|GGT | 0 | 1 | 13.38 |
193751567 | GT-AG | 0 | 1.0486254839641975 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 6 | 3729480 | 3729530 | Syncephalastrum racemosum 13706 | AGA|GTATGTTTGA...AATGCCTTGACT/CCTTGACTCATT...CGTAG|TCA | 1 | 1 | 17.74 |
193751568 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 7 | 3729159 | 3729210 | Syncephalastrum racemosum 13706 | CAT|GTAAGCCGCT...GCTAACTCATCC/AGCTAACTCATC...AATAG|GAA | 0 | 1 | 26.761 |
193751569 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 8 | 3728997 | 3729049 | Syncephalastrum racemosum 13706 | CAG|GTAAAGTCGG...CTCGTCTGATTC/GCTCGTCTGATT...ACAAG|ATG | 1 | 1 | 30.416 |
193751570 | GT-AG | 0 | 0.0002865760769034 | 45 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 9 | 3728712 | 3728756 | Syncephalastrum racemosum 13706 | CTG|GTAATCCTCA...TTTTCTGTGATG/TTTTCTGTGATG...TCTAG|AAA | 1 | 1 | 38.464 |
193751571 | GT-AG | 0 | 1.000000099473604e-05 | 46 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 10 | 3728545 | 3728590 | Syncephalastrum racemosum 13706 | AAA|GTAAGTTCAT...TGCCCTCCAGCT/CTCCAGCTAACC...TCCAG|ATG | 2 | 1 | 42.522 |
193751572 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 11 | 3728213 | 3728271 | Syncephalastrum racemosum 13706 | CGT|GTTGTAAGTT...TGTGCGCTAACT/TGTGCGCTAACT...TTTAG|CAA | 2 | 1 | 51.677 |
193751573 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 12 | 3728091 | 3728141 | Syncephalastrum racemosum 13706 | ATC|GTAAGTCTGC...TACGTATAAACT/TATAAACTGATC...GCCAG|ACG | 1 | 1 | 54.058 |
193751574 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 13 | 3727725 | 3727774 | Syncephalastrum racemosum 13706 | GAG|GTATGAAAGA...TTCGTTCTAACG/TTCGTTCTAACG...CGTAG|AGT | 2 | 1 | 64.655 |
193751575 | GT-AG | 0 | 1.000000099473604e-05 | 47 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 14 | 3727614 | 3727660 | Syncephalastrum racemosum 13706 | AGT|GTAAGTGCTA...TTGTGCTAAACG/ATTGTGCTAAAC...TACAG|ATG | 0 | 1 | 66.801 |
193751576 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 15 | 3727394 | 3727450 | Syncephalastrum racemosum 13706 | CAT|GTGAGTATCG...GAATTCCTGATA/ATTGGGCTTACA...CTTAG|TGT | 1 | 1 | 72.267 |
193751577 | GT-AG | 0 | 1.000000099473604e-05 | 48 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 16 | 3727251 | 3727298 | Syncephalastrum racemosum 13706 | ATG|GTAAGGTAAC...CCTGCCGCAATA/CGCGCACTCATC...TGTAG|CCG | 0 | 1 | 75.453 |
193751578 | GT-AG | 0 | 1.000000099473604e-05 | 46 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 17 | 3727127 | 3727172 | Syncephalastrum racemosum 13706 | ATT|GTAAGTGCCT...AATGCATAAACT/CATAAACTCATC...TTCAG|GGC | 0 | 1 | 78.068 |
193751579 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 18 | 3726779 | 3726832 | Syncephalastrum racemosum 13706 | GAG|GTAGGGCAGA...TCAGGTTTATAT/GAGAGACTGACT...GTTAG|ATG | 0 | 1 | 87.928 |
193751580 | GT-AG | 0 | 0.0026815514663574 | 64 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA431058 34480573 | 19 | 3726550 | 3726613 | Syncephalastrum racemosum 13706 | CAG|GTATATTCTA...CTAGCCTAATCA/GTCTTGCTGACT...AATAG|GCG | 0 | 1 | 93.461 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);