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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 34480571

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751553 GT-AG 0 2.4683751307337792e-05 87 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465269 34480571 1 467354 467440 Syncephalastrum racemosum 13706 ATT|GTAAGATTCA...TTTTTTTTGCCA/TTTTTGCCAATC...TGTAG|GAC 0 1 5.589
193751554 GT-AG 0 0.0006480240744821 83 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465269 34480571 2 466896 466978 Syncephalastrum racemosum 13706 AAG|GTATTATATA...CATTTTTTATTG/TTTTTATTGATT...ATTAG|TTT 0 1 18.064
193751555 GT-AG 0 1.000000099473604e-05 174 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465269 34480571 3 466637 466810 Syncephalastrum racemosum 13706 CAG|GTAAATACAT...TATATTTTATTT/GTATATTTTATT...ATTAG|ACA 1 1 20.892
193751556 GT-AG 0 1.000000099473604e-05 73 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465269 34480571 4 466477 466549 Syncephalastrum racemosum 13706 AAG|GTAATAAAGC...TGGTACTTACCA/GTGGTACTTACC...GTTAG|AAT 1 1 23.786
193751557 GT-AG 0 1.000000099473604e-05 70 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465269 34480571 5 466039 466108 Syncephalastrum racemosum 13706 TTG|GTAAGAAAAT...ATGACTTTGAAT/GATGAACTCATC...GATAG|GAG 0 1 36.028
193751558 GT-AG 0 1.000000099473604e-05 80 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465269 34480571 6 465031 465110 Syncephalastrum racemosum 13706 AAG|GTAAAAAGGA...CTGACCTGATCC/GATATGCTGACC...CGTAG|AGG 1 1 66.9
193751559 GT-AG 0 1.6338997715453988e-05 73 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465269 34480571 7 464826 464898 Syncephalastrum racemosum 13706 TGG|GTAAGATGTC...GTTGCTTTATCT/CTTTATCTAATG...AAAAG|ACA 1 1 71.291
193751560 GT-AG 0 1.000000099473604e-05 80 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA465269 34480571 8 464539 464618 Syncephalastrum racemosum 13706 AAA|GTAAGTCGTA...GGGTCCTTCCCC/GTTTTTCTCACG...TCCAG|AGC 1 1 78.177

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 22.938ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)