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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

19 rows where transcript_id = 34480567

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Suggested facets: dinucleotide_pair, score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751524 GT-AG 0 1.000000099473604e-05 92 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 1 4621255 4621346 Syncephalastrum racemosum 13706 GAG|GTATGAGTCT...TCTGCCTTTTTC/CTTTGTCTCATT...TTCAG|TTG 0 1 6.557
193751525 GT-AG 0 0.0826151356063753 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 2 4621184 4621232 Syncephalastrum racemosum 13706 GTT|GTACGTTTTC...CTTTCGTTGACT/CTTTCGTTGACT...TTTAG|CAT 1 1 7.265
193751526 GT-AG 0 0.0001092793064072 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 3 4620837 4620893 Syncephalastrum racemosum 13706 CAG|GTACGTGCTT...TTATCTTTGACA/TTTATCTTTATC...CAAAG|TTC 0 1 16.586
193751527 GT-AG 0 0.0001583862175349 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 4 4620561 4620613 Syncephalastrum racemosum 13706 TCG|GTAAGCATCT...TGTCCCTCATTT/CTGTCCCTCATT...AAAAG|CCG 1 1 23.754
193751528 GT-AG 0 0.0004876190640937 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 5 4620260 4620310 Syncephalastrum racemosum 13706 TGT|GTAGGTCTTG...TTCATTTTATTC/ATTTTATTCATT...CATAG|GGA 2 1 31.79
193751529 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 6 4620100 4620148 Syncephalastrum racemosum 13706 TAG|GTAAGAAGGA...TGTACCTTACCC/ATGTACCTTACC...CATAG|TAC 2 1 35.358
193751530 GT-AG 0 2.214361567063521e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 7 4619949 4620008 Syncephalastrum racemosum 13706 CAG|GTACATACTC...CATGCATTGAAA/ATCGTACTCATC...TTAAG|CTC 0 1 38.284
193751531 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 8 4619785 4619839 Syncephalastrum racemosum 13706 TTG|GTAAGTGGTG...ATGTCCTGGAGT/AGTTGGCTGACA...GAAAG|TGG 1 1 41.787
193751532 GT-AG 0 1.000000099473604e-05 77 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 9 4619610 4619686 Syncephalastrum racemosum 13706 GCG|GTAGGTGACT...AAAGACTCATCT/GAAAGACTCATC...TTTAG|TAC 0 1 44.937
193751533 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 10 4619520 4619571 Syncephalastrum racemosum 13706 CTC|GTAAGTGGTA...TCGCTCACATTT/AGATCGCTCACA...TTCAG|GAA 2 1 46.159
193751534 GC-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 11 4619448 4619498 Syncephalastrum racemosum 13706 ATA|GCAAGTGTTA...CAAGCATTGATT/CAAGCATTGATT...TATAG|CTC 2 1 46.834
193751535 GT-AG 0 1.000000099473604e-05 46 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 12 4619360 4619405 Syncephalastrum racemosum 13706 ACA|GTAAGTGCCT...GATACATTATTC/ACATTATTCATG...CGCAG|CAA 2 1 48.184
193751536 GC-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 13 4619248 4619303 Syncephalastrum racemosum 13706 ATG|GCAAGTACTA...ATGGACCTAACG/ATGGACCTAACG...TATAG|GAG 1 1 49.984
193751537 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 14 4619096 4619154 Syncephalastrum racemosum 13706 TTG|GTAAAAATAA...AATCGCTTACTG/TAATCGCTTACT...CATAG|ACA 1 1 52.973
193751538 GT-AG 0 6.565914865252833e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 15 4618783 4618833 Syncephalastrum racemosum 13706 TTC|GTAAGTTACT...AAAATCTTTGCG/TTTGTACTCAAA...TTCAG|TCA 2 1 61.395
193751539 GT-AG 0 0.0001309562515073 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 16 4618127 4618176 Syncephalastrum racemosum 13706 CAG|GTAGGCCTCC...GACCCTTTGAAT/AGCGTACTCATA...CCTAG|CGT 2 1 80.874
193751540 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 17 4617990 4618046 Syncephalastrum racemosum 13706 AAC|GTAAGTCAAG...AGTGGCTGAATA/TAGTGGCTGAAT...ACCAG|CGG 1 1 83.446
193751541 GT-AG 0 6.0721176020599535e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 18 4617818 4617873 Syncephalastrum racemosum 13706 GCA|GTAAGTTTTC...TGTGGATTGACA/TGTGGATTGACA...TGTAG|GGC 0 1 87.175
193751542 GT-AG 0 2.6915463275028337e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA560512 34480567 19 4617505 4617562 Syncephalastrum racemosum 13706 CAG|GTACGTCTTC...GAGATCATAACA/GAAAGTCTTATG...CTTAG|GGC 0 1 95.371

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 114.614ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)