introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
10 rows where transcript_id = 34480565
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751509 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466128 34480565 | 1 | 1949202 | 1949269 | Syncephalastrum racemosum 13706 | GCA|GTGAGTGATA...GTAATCTCAATG/GGTAATCTCAAT...GACAG|AAT | 1 | 1 | 3.292 |
193751510 | GT-AG | 0 | 7.497373886144284e-05 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466128 34480565 | 2 | 1949413 | 1949469 | Syncephalastrum racemosum 13706 | AAT|GTACGTCTTC...CGCACGTTACAC/ATCAAAATGACA...TGTAG|GTC | 0 | 1 | 7.862 |
193751511 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466128 34480565 | 3 | 1949685 | 1949744 | Syncephalastrum racemosum 13706 | AGG|GTAAACAAAG...TAGCGCTTACAG/ATAGCGCTTACA...TATAG|CTT | 2 | 1 | 14.733 |
193751512 | GT-AG | 0 | 4.680065796950063e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466128 34480565 | 4 | 1949930 | 1949979 | Syncephalastrum racemosum 13706 | GAA|GTAAGTCTCG...ATGCTTTTATTC/AATGCTTTTATT...TGTAG|CCA | 1 | 1 | 20.646 |
193751513 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466128 34480565 | 5 | 1950519 | 1950572 | Syncephalastrum racemosum 13706 | CAG|GTAAGCCAAT...TAGTCTTTATTG/ATCATACTCAAT...TTTAG|CGG | 0 | 1 | 37.872 |
193751514 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466128 34480565 | 6 | 1950667 | 1950719 | Syncephalastrum racemosum 13706 | AAC|GTGCGTATTA...TGGTACTTACTG/ATGGTACTTACT...GTCAG|ATG | 1 | 1 | 40.876 |
193751515 | GT-AG | 0 | 1.1369028878575164e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466128 34480565 | 7 | 1950962 | 1951010 | Syncephalastrum racemosum 13706 | GGG|GTACGTGTAT...TTCGTGTTGATG/TTCGTGTTGATG...GGTAG|AAC | 0 | 1 | 48.61 |
193751516 | GT-AG | 0 | 0.0732275123228918 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466128 34480565 | 8 | 1951236 | 1951284 | Syncephalastrum racemosum 13706 | AGG|GTATGCTTTA...GGAGCCTGAGTA/GAGTAAATCATT...AATAG|GAA | 0 | 1 | 55.801 |
193751517 | GT-AG | 0 | 0.0019002275060229 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466128 34480565 | 9 | 1951373 | 1951422 | Syncephalastrum racemosum 13706 | CAT|GTTTTCCTAT...TTGTGCTCAGTA/ATTGTGCTCAGT...CCGAG|ATC | 1 | 1 | 58.613 |
193751518 | GT-AG | 0 | 0.000262672143255 | 62 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA466128 34480565 | 10 | 1951486 | 1951547 | Syncephalastrum racemosum 13706 | TGG|GTAGGCATAG...GTCTCATTAACT/GAACGTCTCATT...TATAG|ACT | 1 | 1 | 60.626 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);