introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
10 rows where transcript_id = 34480563
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751491 | GT-AG | 0 | 1.000000099473604e-05 | 109 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510463 34480563 | 1 | 3289791 | 3289899 | Syncephalastrum racemosum 13706 | CCC|GTAAGTCAGA...TCTCTCTTTACG/CATATGCTTATT...GGTAG|GAC | 0 | 1 | 6.616 |
193751492 | GT-AG | 0 | 0.0151051200574566 | 69 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510463 34480563 | 2 | 3290006 | 3290074 | Syncephalastrum racemosum 13706 | CAG|GTACCTTCCT...TTGTTTTTGTTC/TTTTTGTTCACG...TTAAG|GAT | 1 | 1 | 9.956 |
193751493 | GT-AG | 0 | 5.100965405238509e-05 | 99 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510463 34480563 | 3 | 3290234 | 3290332 | Syncephalastrum racemosum 13706 | CAG|GTATGTGATG...TGTTCTGTGATC/CGATATGTCATA...GACAG|AAC | 1 | 1 | 14.965 |
193751494 | GT-AG | 0 | 0.0034900721106232 | 61 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510463 34480563 | 4 | 3290552 | 3290612 | Syncephalastrum racemosum 13706 | AAG|GTACCTCGTT...TAAGTCTTACGC/ATAAGTCTTACG...CCTAG|ATT | 1 | 1 | 21.865 |
193751495 | GT-AG | 0 | 1.913602776051406e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510463 34480563 | 5 | 3290726 | 3290778 | Syncephalastrum racemosum 13706 | AAC|GTAAATCAGA...TTTCTCTTGAGA/AAAAGACTGACA...TTTAG|ACA | 0 | 1 | 25.425 |
193751496 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510463 34480563 | 6 | 3290869 | 3290921 | Syncephalastrum racemosum 13706 | CAG|GTTGGTGTAC...CGCCACGTGACA/TGCATGCTGACA...AATAG|CCA | 0 | 1 | 28.261 |
193751497 | GT-AG | 0 | 1.5279871793338068e-05 | 61 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510463 34480563 | 7 | 3291088 | 3291148 | Syncephalastrum racemosum 13706 | TGG|GTATGAACTA...TTTTCCACAACT/ACTAAATTGACT...TATAG|GAC | 1 | 1 | 33.491 |
193751498 | GT-AG | 0 | 1.000000099473604e-05 | 90 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510463 34480563 | 8 | 3291538 | 3291627 | Syncephalastrum racemosum 13706 | CAG|GTAAGGTGGA...TATACCTAATTT/TTATACCTAATT...TATAG|ACG | 0 | 1 | 45.747 |
193751499 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510463 34480563 | 9 | 3291879 | 3291927 | Syncephalastrum racemosum 13706 | ATA|GTAGGTCCAT...GTTTTTCTGATG/GTTTTTCTGATG...CATAG|CCT | 2 | 1 | 53.655 |
193751500 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA510463 34480563 | 10 | 3292031 | 3292083 | Syncephalastrum racemosum 13706 | TCT|GTGAGTACAC...CTCCTTTTGAAA/GAAATGCTCATA...TATAG|CTC | 0 | 1 | 56.9 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);