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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 34480562

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751484 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA413929 34480562 1 3816726 3816782 Syncephalastrum racemosum 13706 TAG|GTGAGTAAGC...TATGCGTTGAAG/CAATAGCTAATT...CGTAG|CTC 2 1 17.421
193751485 GT-AG 0 0.3812300458531597 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA413929 34480562 2 3816521 3816578 Syncephalastrum racemosum 13706 GCT|GTATGTATTT...ATTTCTTTACTT/ATCCTTCTCATT...TGTAG|ATT 2 1 22.044
193751486 GT-AG 0 6.50772713892706e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA413929 34480562 3 3816247 3816298 Syncephalastrum racemosum 13706 TAT|GTAAGATTGG...TTATCCTAAACT/ATTGTGCTTATC...TATAG|ATA 2 1 29.025
193751487 GT-AG 0 1.000000099473604e-05 66 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA413929 34480562 4 3816095 3816160 Syncephalastrum racemosum 13706 CGG|GTGAGGAAAT...AAGCAGTTGAAT/AGTTGAATAATT...CTCAG|AAA 1 1 31.73
193751488 GT-AG 0 0.0009056506620436 71 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA413929 34480562 5 3815738 3815808 Syncephalastrum racemosum 13706 CAT|GTAAGCTAAT...GAAATCTTAACG/GAAATCTTAACG...CGTAG|GGA 2 1 40.723
193751489 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA413929 34480562 6 3815514 3815567 Syncephalastrum racemosum 13706 AAG|GTAAATGAAC...TCTGCTCTAATA/GTGTATCTAATA...ATTAG|TCC 1 1 46.069
193751490 GT-AG 0 1.946890222822372e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA413929 34480562 7 3814171 3814224 Syncephalastrum racemosum 13706 AAG|GTATGATATA...GGATTCTGACTC/GGGATTCTGACT...TGTAG|TTG 0 1 86.604

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.404ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)