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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

11 rows where transcript_id = 34480561

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751473 GT-AG 0 0.0002067449382738 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 1 3822358 3822404 Syncephalastrum racemosum 13706 TTT|GTAAGTTCTG...CCTTCTTTAAGG/CTTGTACTCATG...GTAAG|GAC 2 1 48.933
193751474 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 2 3822989 3823037 Syncephalastrum racemosum 13706 TTG|GTAAAGTCTA...AGCGCATGAACT/GGTGAATTGATT...AATAG|GCG 1 1 67.263
193751475 GT-AG 0 0.0047755395654378 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 3 3823080 3823130 Syncephalastrum racemosum 13706 AAG|GTATGCGTTG...GCTGCCGTGATT/CGTGATTTAATC...TACAG|ATT 1 1 68.581
193751476 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 4 3823277 3823330 Syncephalastrum racemosum 13706 AAG|GTAAACGTCT...GTTTGCTCAAAA/TGTTTGCTCAAA...GCCAG|GTG 0 1 73.164
193751477 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 5 3823488 3823541 Syncephalastrum racemosum 13706 AAG|GTAAGTCGAA...AAAACTATAAAC/ACATGGTTGAAA...TCTAG|GCG 1 1 78.092
193751478 GT-AG 0 0.0103551975342494 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 6 3823622 3823682 Syncephalastrum racemosum 13706 TTT|GTAAGCATGA...TTGTCCTTAATC/TTGTCCTTAATC...TGTAG|CAT 0 1 80.603
193751479 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 7 3823856 3823910 Syncephalastrum racemosum 13706 GCG|GTAAGTCCTC...GATCATTTACCA/GGATCATTTACC...CACAG|CGT 2 1 86.033
193751480 GT-AG 0 9.268127190128872e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 8 3824086 3824134 Syncephalastrum racemosum 13706 AAG|GTAAGCTTGA...GGTTTATTGACT/GGTTTATTGACT...CATAG|CCG 0 1 91.525
193751481 GT-AG 0 0.0005200665925847 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 9 3824305 3824360 Syncephalastrum racemosum 13706 ATG|GTATGTATAA...CTGTTTGTGATT/CTGTTTGTGATT...ATTAG|CTT 2 1 96.861
193751482 GT-AG 0 4.234981095189078e-05 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 10 3824384 3824438 Syncephalastrum racemosum 13706 CAG|GTAACAGATG...AAGCCTTTAACG/AAGATATTGACG...AAAAG|CAT 1 1 97.583
193751483 GT-AG 0 1.000000099473604e-05 72 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 11 3824481 3824552 Syncephalastrum racemosum 13706 ATG|GTAAGAAAAT...GCATGCTTGCTG/TGCTTGCTGACG...AGTAG|CGA 1 1 98.901

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 49.524ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)