introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
11 rows where transcript_id = 34480561
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751473 | GT-AG | 0 | 0.0002067449382738 | 47 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 | 1 | 3822358 | 3822404 | Syncephalastrum racemosum 13706 | TTT|GTAAGTTCTG...CCTTCTTTAAGG/CTTGTACTCATG...GTAAG|GAC | 2 | 1 | 48.933 |
193751474 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 | 2 | 3822989 | 3823037 | Syncephalastrum racemosum 13706 | TTG|GTAAAGTCTA...AGCGCATGAACT/GGTGAATTGATT...AATAG|GCG | 1 | 1 | 67.263 |
193751475 | GT-AG | 0 | 0.0047755395654378 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 | 3 | 3823080 | 3823130 | Syncephalastrum racemosum 13706 | AAG|GTATGCGTTG...GCTGCCGTGATT/CGTGATTTAATC...TACAG|ATT | 1 | 1 | 68.581 |
193751476 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 | 4 | 3823277 | 3823330 | Syncephalastrum racemosum 13706 | AAG|GTAAACGTCT...GTTTGCTCAAAA/TGTTTGCTCAAA...GCCAG|GTG | 0 | 1 | 73.164 |
193751477 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 | 5 | 3823488 | 3823541 | Syncephalastrum racemosum 13706 | AAG|GTAAGTCGAA...AAAACTATAAAC/ACATGGTTGAAA...TCTAG|GCG | 1 | 1 | 78.092 |
193751478 | GT-AG | 0 | 0.0103551975342494 | 61 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 | 6 | 3823622 | 3823682 | Syncephalastrum racemosum 13706 | TTT|GTAAGCATGA...TTGTCCTTAATC/TTGTCCTTAATC...TGTAG|CAT | 0 | 1 | 80.603 |
193751479 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 | 7 | 3823856 | 3823910 | Syncephalastrum racemosum 13706 | GCG|GTAAGTCCTC...GATCATTTACCA/GGATCATTTACC...CACAG|CGT | 2 | 1 | 86.033 |
193751480 | GT-AG | 0 | 9.268127190128872e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 | 8 | 3824086 | 3824134 | Syncephalastrum racemosum 13706 | AAG|GTAAGCTTGA...GGTTTATTGACT/GGTTTATTGACT...CATAG|CCG | 0 | 1 | 91.525 |
193751481 | GT-AG | 0 | 0.0005200665925847 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 | 9 | 3824305 | 3824360 | Syncephalastrum racemosum 13706 | ATG|GTATGTATAA...CTGTTTGTGATT/CTGTTTGTGATT...ATTAG|CTT | 2 | 1 | 96.861 |
193751482 | GT-AG | 0 | 4.234981095189078e-05 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 | 10 | 3824384 | 3824438 | Syncephalastrum racemosum 13706 | CAG|GTAACAGATG...AAGCCTTTAACG/AAGATATTGACG...AAAAG|CAT | 1 | 1 | 97.583 |
193751483 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA483669 34480561 | 11 | 3824481 | 3824552 | Syncephalastrum racemosum 13706 | ATG|GTAAGAAAAT...GCATGCTTGCTG/TGCTTGCTGACG...AGTAG|CGA | 1 | 1 | 98.901 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);