introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
15 rows where transcript_id = 34480560
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751458 | GT-AG | 0 | 0.0022170399914082 | 68 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 1 | 1246697 | 1246764 | Syncephalastrum racemosum 13706 | TTG|GTACTCAATT...TATTTCATAACC/TAATATTTCATA...TATAG|TGC | 0 | 1 | 4.049 |
193751459 | GT-AG | 0 | 1.000000099473604e-05 | 87 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 2 | 1246558 | 1246644 | Syncephalastrum racemosum 13706 | CTG|GTAAAGATGA...CGAAACTTAGCT/ACACTTTTGAGA...TATAG|CAA | 1 | 1 | 5.681 |
193751460 | GT-AG | 0 | 1.000000099473604e-05 | 66 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 3 | 1246385 | 1246450 | Syncephalastrum racemosum 13706 | AAG|GTAATAACTA...GAATCTTTTTCC/CCGATTCTCACA...TCTAG|AAT | 0 | 1 | 9.04 |
193751461 | GT-AG | 0 | 0.0006776721342568 | 78 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 4 | 1246223 | 1246300 | Syncephalastrum racemosum 13706 | AAC|GTAAGTTTAT...GTTATCTTATCT/GGTTATCTTATC...TTCAG|AGT | 0 | 1 | 11.676 |
193751462 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 5 | 1245985 | 1246033 | Syncephalastrum racemosum 13706 | CAC|GTAAGGGATA...TCTCTCCTATCT/ACCTTTCTAATG...TTTAG|ATA | 0 | 1 | 17.608 |
193751463 | GT-AG | 0 | 3.865476012436827e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 6 | 1245823 | 1245873 | Syncephalastrum racemosum 13706 | GAT|GTAAGCGGCA...AAATTCTCAATT/CAAATTCTCAAT...GTCAG|AAA | 0 | 1 | 21.092 |
193751464 | GT-AG | 0 | 1.6089158163102245e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 7 | 1245666 | 1245725 | Syncephalastrum racemosum 13706 | AAG|GTACATCACA...TCCTCCATACTA/TCCATACTAATG...AATAG|AAC | 1 | 1 | 24.137 |
193751465 | GT-AG | 0 | 8.429370648120955e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 8 | 1245461 | 1245510 | Syncephalastrum racemosum 13706 | CCT|GTAAGTCACC...CTTTTCTTACTG/CCTTTTCTTACT...CCAAG|GCC | 0 | 1 | 29.002 |
193751466 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 9 | 1245095 | 1245153 | Syncephalastrum racemosum 13706 | AAG|GTAAATCGAG...GGACTCATATAT/GACGGACTCATA...GATAG|ACA | 1 | 1 | 38.638 |
193751467 | GT-AG | 0 | 1.000000099473604e-05 | 69 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 10 | 1244780 | 1244848 | Syncephalastrum racemosum 13706 | AAG|GTAAAGAGAA...TTCTTTTTATTT/ATTCTTTTTATT...GATAG|ATG | 1 | 1 | 46.359 |
193751468 | GT-AG | 0 | 0.0001144586202711 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 11 | 1244502 | 1244556 | Syncephalastrum racemosum 13706 | TGT|GTAAGTTTTT...TCATGGTTATCT/CCGTGTCTCATG...TGTAG|ACT | 2 | 1 | 53.358 |
193751469 | GT-AG | 0 | 1.268806264502796e-05 | 66 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 12 | 1244314 | 1244379 | Syncephalastrum racemosum 13706 | ACT|GTAAGTCGGG...ATACTCATAATT/GGTATACTCATA...TACAG|TAT | 1 | 1 | 57.188 |
193751470 | GT-AG | 0 | 0.0126481744378148 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 13 | 1243870 | 1243924 | Syncephalastrum racemosum 13706 | AAG|GTATGCTCAG...TAACCCTAAACA/AACATACTTATA...TGTAG|CCA | 0 | 1 | 69.397 |
193751471 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 14 | 1243251 | 1243299 | Syncephalastrum racemosum 13706 | AAG|GTGAGACCCA...AATACTGTATAC/TGTATACTGACC...AATAG|AAA | 0 | 1 | 87.288 |
193751472 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 | 15 | 1242946 | 1242996 | Syncephalastrum racemosum 13706 | CTG|GTGAGACCTT...CTTGTATTAATT/CTTGTATTAATT...TTTAG|CAA | 2 | 1 | 95.261 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);