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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

15 rows where transcript_id = 34480560

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751458 GT-AG 0 0.0022170399914082 68 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 1 1246697 1246764 Syncephalastrum racemosum 13706 TTG|GTACTCAATT...TATTTCATAACC/TAATATTTCATA...TATAG|TGC 0 1 4.049
193751459 GT-AG 0 1.000000099473604e-05 87 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 2 1246558 1246644 Syncephalastrum racemosum 13706 CTG|GTAAAGATGA...CGAAACTTAGCT/ACACTTTTGAGA...TATAG|CAA 1 1 5.681
193751460 GT-AG 0 1.000000099473604e-05 66 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 3 1246385 1246450 Syncephalastrum racemosum 13706 AAG|GTAATAACTA...GAATCTTTTTCC/CCGATTCTCACA...TCTAG|AAT 0 1 9.04
193751461 GT-AG 0 0.0006776721342568 78 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 4 1246223 1246300 Syncephalastrum racemosum 13706 AAC|GTAAGTTTAT...GTTATCTTATCT/GGTTATCTTATC...TTCAG|AGT 0 1 11.676
193751462 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 5 1245985 1246033 Syncephalastrum racemosum 13706 CAC|GTAAGGGATA...TCTCTCCTATCT/ACCTTTCTAATG...TTTAG|ATA 0 1 17.608
193751463 GT-AG 0 3.865476012436827e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 6 1245823 1245873 Syncephalastrum racemosum 13706 GAT|GTAAGCGGCA...AAATTCTCAATT/CAAATTCTCAAT...GTCAG|AAA 0 1 21.092
193751464 GT-AG 0 1.6089158163102245e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 7 1245666 1245725 Syncephalastrum racemosum 13706 AAG|GTACATCACA...TCCTCCATACTA/TCCATACTAATG...AATAG|AAC 1 1 24.137
193751465 GT-AG 0 8.429370648120955e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 8 1245461 1245510 Syncephalastrum racemosum 13706 CCT|GTAAGTCACC...CTTTTCTTACTG/CCTTTTCTTACT...CCAAG|GCC 0 1 29.002
193751466 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 9 1245095 1245153 Syncephalastrum racemosum 13706 AAG|GTAAATCGAG...GGACTCATATAT/GACGGACTCATA...GATAG|ACA 1 1 38.638
193751467 GT-AG 0 1.000000099473604e-05 69 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 10 1244780 1244848 Syncephalastrum racemosum 13706 AAG|GTAAAGAGAA...TTCTTTTTATTT/ATTCTTTTTATT...GATAG|ATG 1 1 46.359
193751468 GT-AG 0 0.0001144586202711 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 11 1244502 1244556 Syncephalastrum racemosum 13706 TGT|GTAAGTTTTT...TCATGGTTATCT/CCGTGTCTCATG...TGTAG|ACT 2 1 53.358
193751469 GT-AG 0 1.268806264502796e-05 66 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 12 1244314 1244379 Syncephalastrum racemosum 13706 ACT|GTAAGTCGGG...ATACTCATAATT/GGTATACTCATA...TACAG|TAT 1 1 57.188
193751470 GT-AG 0 0.0126481744378148 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 13 1243870 1243924 Syncephalastrum racemosum 13706 AAG|GTATGCTCAG...TAACCCTAAACA/AACATACTTATA...TGTAG|CCA 0 1 69.397
193751471 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 14 1243251 1243299 Syncephalastrum racemosum 13706 AAG|GTGAGACCCA...AATACTGTATAC/TGTATACTGACC...AATAG|AAA 0 1 87.288
193751472 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481839 34480560 15 1242946 1242996 Syncephalastrum racemosum 13706 CTG|GTGAGACCTT...CTTGTATTAATT/CTTGTATTAATT...TTTAG|CAA 2 1 95.261

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.36ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)