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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 34480551

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751400 GT-AG 0 0.0007731508508233 124 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA509868 34480551 1 1537631 1537754 Syncephalastrum racemosum 13706 ATG|GTACACACCT...TCTTCCTTCTCT/TTGTTTTTCATT...ATCAG|GAT 0 1 4.392
193751401 GT-AG 0 0.0024402963135926 65 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA509868 34480551 2 1538139 1538203 Syncephalastrum racemosum 13706 AAG|GTACCGTCCT...TATTCATTGAAA/TAGATATTCATT...AATAG|TAC 0 1 16.102
193751402 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA509868 34480551 3 1538265 1538323 Syncephalastrum racemosum 13706 ATG|GTAATAGTTT...TCACCCATTATG/ACGATATTCACC...TAAAG|AGG 1 1 17.963
193751403 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA509868 34480551 4 1538420 1538483 Syncephalastrum racemosum 13706 AAG|GTAAGATTAT...GAACTCATATTT/CAGGAACTCATA...TTTAG|AGT 1 1 20.891
193751404 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA509868 34480551 5 1538625 1538688 Syncephalastrum racemosum 13706 ACC|GTGAATATGA...GGATGCTTATAA/AGGATGCTTATA...CTCAG|ATT 1 1 25.191
193751405 GT-AG 0 0.0008201907787731 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA509868 34480551 6 1538874 1538934 Syncephalastrum racemosum 13706 CTG|GTATGCACTA...TATAACTTACAC/ATATAACTTACA...GCCAG|GAA 0 1 30.833
193751406 GT-AG 0 1.000000099473604e-05 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA509868 34480551 7 1539341 1539387 Syncephalastrum racemosum 13706 CAG|GTAAAGAAAA...CATCCTATGAGA/GAGAAACTGACC...TGTAG|ATA 1 1 43.214
193751407 GT-AG 0 2.745595686346684e-05 68 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA509868 34480551 8 1540276 1540343 Syncephalastrum racemosum 13706 TGG|GTAAGCTACA...GTGCTCATACAT/GGAGTGCTCATA...TGAAG|ACA 1 1 70.296

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 34.038ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)