introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
11 rows where transcript_id = 34480549
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Suggested facets: dinucleotide_pair, score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751385 | GC-AG | 0 | 0.0027515324269415 | 73 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451021 34480549 | 1 | 3645748 | 3645820 | Syncephalastrum racemosum 13706 | CAT|GCATGTTATT...CCTTCCTTCCTT/TATAAACTGACA...TTTAG|TGA | 2 | 1 | 2.868 |
193751386 | GT-AG | 0 | 0.0004371018874659 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451021 34480549 | 2 | 3645558 | 3645613 | Syncephalastrum racemosum 13706 | ACC|GTAAGTTCAT...TTCGCATTAACG/TTCGCATTAACG...GTAAG|TCA | 1 | 1 | 6.914 |
193751387 | GT-AG | 0 | 1.3865683603172868e-05 | 59 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451021 34480549 | 3 | 3645432 | 3645490 | Syncephalastrum racemosum 13706 | CAG|GTAAACTCAG...TGAACGTTGATA/TGAATATTGATT...TATAG|GTC | 2 | 1 | 8.937 |
193751388 | GT-AG | 0 | 0.0016749312835803 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451021 34480549 | 4 | 3644686 | 3644738 | Syncephalastrum racemosum 13706 | CAT|GTACGTTTGC...TTCGCCTAATTG/ATTCGCCTAATT...TTTAG|GCA | 2 | 1 | 29.861 |
193751389 | GT-AG | 0 | 1.1740945928417726e-05 | 48 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451021 34480549 | 5 | 3643887 | 3643934 | Syncephalastrum racemosum 13706 | AAT|GTAAGTTGCG...TTGGCTTCAGTG/TGGATACTCATT...AACAG|TGG | 0 | 1 | 52.536 |
193751390 | GT-AG | 0 | 1.000000099473604e-05 | 47 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451021 34480549 | 6 | 3643804 | 3643850 | Syncephalastrum racemosum 13706 | AAG|GTGAGATAAT...CATGGTCTAACG/CATGGTCTAACG...TATAG|AGC | 0 | 1 | 53.623 |
193751391 | GT-AG | 0 | 0.0125071532886901 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451021 34480549 | 7 | 3643673 | 3643722 | Syncephalastrum racemosum 13706 | AAA|GTAACCAAAA...ACTTTCTTCACT/ACTTTCTTCACT...AGTAG|GTG | 0 | 1 | 56.069 |
193751392 | GT-AG | 0 | 1.000000099473604e-05 | 45 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451021 34480549 | 8 | 3643453 | 3643497 | Syncephalastrum racemosum 13706 | GAG|GTAAACAAAA...TTATGCTAAATG/GTTATGCTAAAT...ATTAG|GCC | 1 | 1 | 61.353 |
193751393 | GT-AG | 0 | 0.0002991722154299 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451021 34480549 | 9 | 3643350 | 3643398 | Syncephalastrum racemosum 13706 | AAG|GTATGTATGC...AAATATTTACCT/TAAATATTTACC...ACTAG|CTA | 1 | 1 | 62.983 |
193751394 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451021 34480549 | 10 | 3642501 | 3642557 | Syncephalastrum racemosum 13706 | CAG|GTAGGGTGCA...TTGTCTGTAACT/TTTTTTCTGACA...AATAG|AGA | 1 | 1 | 86.896 |
193751395 | GT-AG | 0 | 2.0394078710523608e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451021 34480549 | 11 | 3642354 | 3642405 | Syncephalastrum racemosum 13706 | AAG|GTACGTATCC...GATTATTTATCA/TGATTATTTATC...CTTAG|CTC | 0 | 1 | 89.764 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);