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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 34480547

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751375 GT-AG 0 6.066207695649699e-05 65 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA43629 34480547 1 2987058 2987122 Syncephalastrum racemosum 13706 GAG|GTAACATCCA...AAGATCTAACTC/AAAGATCTAACT...ATCAG|ATG 0 1 26.655
193751376 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA43629 34480547 2 2987303 2987366 Syncephalastrum racemosum 13706 CTG|GTAAGTATAC...ATAGCCTGAACA/CCGCTTCTAATC...CGCAG|GAT 0 1 32.021
193751377 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA43629 34480547 3 2987478 2987541 Syncephalastrum racemosum 13706 GAG|GTAGAGTGAT...AAATACTTAGCA/CAAATACTTAGC...CATAG|GAA 0 1 35.331
193751378 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA43629 34480547 4 2987786 2987849 Syncephalastrum racemosum 13706 AAG|GTAAAACCAT...GTCTTTTTGAGT/AGTGGATTAACC...CCTAG|TCT 1 1 42.606
193751379 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA43629 34480547 5 2988435 2988493 Syncephalastrum racemosum 13706 TTG|GTAAGAAGCA...TTTGTCTAAACA/ATTTGTCTAAAC...TCCAG|AAC 1 1 60.048
193751380 GT-AG 0 8.998044930955267e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA43629 34480547 6 2989324 2989381 Syncephalastrum racemosum 13706 GAT|GTAGGTTGTG...GCTGCTTTTTCC/GATCGACTTACA...TGCAG|CCT 0 1 84.794
193751381 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA43629 34480547 7 2989664 2989716 Syncephalastrum racemosum 13706 CAA|GTAAGTAGGA...ACAGCTTGGATT/CTTGGATTGATG...CCTAG|GCT 0 1 93.202
193751382 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA43629 34480547 8 2989794 2989853 Syncephalastrum racemosum 13706 GGA|GTAAGTGCAA...ATATACTAAACC/AATATACTAAAC...TTTAG|CCC 2 1 95.498

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.546ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)