home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 34480544

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, length

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751362 GT-AG 0 0.0594056525364652 69 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451500 34480544 1 4425955 4426023 Syncephalastrum racemosum 13706 GAA|GTATGCTATT...AATGGTTTAATG/AATGGTTTAATG...TGTAG|GAA 0 1 2.028
193751363 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451500 34480544 2 4425089 4425144 Syncephalastrum racemosum 13706 CAA|GTAAGACCGG...AATGGCTTTGTG/TGGGTACTGATG...ACTAG|ATC 0 1 25.838
193751364 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451500 34480544 3 4424678 4424731 Syncephalastrum racemosum 13706 AAG|GTGGGTACAT...TGGTCATTAAAC/TGGTCATTAAAC...TTTAG|ATC 0 1 36.332
193751365 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451500 34480544 4 4424439 4424494 Syncephalastrum racemosum 13706 TTG|GTAAGTCCAA...GACAACTCACAC/AGACAACTCACA...TATAG|TAC 0 1 41.711
193751366 GT-AG 0 4.177577836935261e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451500 34480544 5 4424084 4424135 Syncephalastrum racemosum 13706 TCG|GTAAGTTTTG...CGTTACTTACTC/TACTTACTCATT...TCTAG|AGC 0 1 50.617
193751367 GT-AG 0 1.000000099473604e-05 77 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA451500 34480544 6 4422975 4423051 Syncephalastrum racemosum 13706 ACG|GTAAAGCAAA...CTTGTTTTAGTG/AATAATCTAACT...ATCAG|ATC 0 1 80.952

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 32.204ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)