home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

15 rows where transcript_id = 34480541

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751336 GT-AG 0 1.1154877933324569e-05 66 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 1 1117755 1117820 Syncephalastrum racemosum 13706 ATT|GTACGGAATA...CATGCCTAACCA/TCATGCCTAACC...TTTAG|ATG 0 1 3.368
193751337 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 2 1118023 1118073 Syncephalastrum racemosum 13706 AAG|GTAAGAACCG...GCCGTCCTATCT/TATCTTTCTATT...CATAG|GAT 1 1 9.182
193751338 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 3 1119486 1119541 Syncephalastrum racemosum 13706 GAG|GTAAGAAAGA...CTCACTTTATGC/AAGGAGCTCACT...GATAG|GCG 0 1 49.827
193751339 GT-AG 0 1.1370610591473564e-05 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 4 1119692 1119752 Syncephalastrum racemosum 13706 ACG|GTAAACCGCA...GAGCCCGTGAAC/CGTGAACTGACT...TCTAG|GTA 0 1 54.145
193751340 GT-AG 0 0.0004071580718426 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 5 1119855 1119911 Syncephalastrum racemosum 13706 CGG|GTATGTGTGA...ATACTCGTAACG/ATACTCGTAACG...GATAG|AAT 0 1 57.081
193751341 GT-AG 0 0.0022891756947165 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 6 1120059 1120109 Syncephalastrum racemosum 13706 GAG|GTATGCCACA...ATCGACTTAACG/ATTTGTCTGAGT...TTTAG|ATT 0 1 61.313
193751342 GT-AG 0 8.542098242402533e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 7 1120200 1120249 Syncephalastrum racemosum 13706 GAG|GTATGTGGAT...CGTCCCATGACT/AAATATCTAAAT...ACAAG|CGA 0 1 63.903
193751343 GT-AG 0 1.5546523753892754e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 8 1120359 1120408 Syncephalastrum racemosum 13706 AAT|GTAGGTTACA...AAGTACTCATCT/CAAGTACTCATC...CTCAG|TGG 1 1 67.041
193751344 GT-AG 0 1.000000099473604e-05 45 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 9 1120619 1120663 Syncephalastrum racemosum 13706 CTG|GTAAGTCTGC...TGTCTTTTGTCC/TGTTATCTAATG...GTTAG|TCA 1 1 73.086
193751345 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 10 1120751 1120799 Syncephalastrum racemosum 13706 AAG|GTGAGCTTCT...GCGAGATTAATT/GCGAGATTAATT...TTTAG|ACG 1 1 75.59
193751346 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 11 1120935 1120985 Syncephalastrum racemosum 13706 CGA|GTAAGGCACC...ATGGATGTAACT/ATGGATGTAACT...CATAG|TCG 1 1 79.476
193751347 GT-AG 0 0.0001195299479601 63 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 12 1121147 1121209 Syncephalastrum racemosum 13706 GAG|GTACTTATAG...TCATCCTTTTCT/CCTTTTCTCACC...ACAAG|CCT 0 1 84.111
193751348 GT-AG 0 1.000000099473604e-05 62 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 13 1121397 1121458 Syncephalastrum racemosum 13706 CAG|GTAAAGTTAT...TATCTGTTAACT/TATCTGTTAACT...GTCAG|CAA 1 1 89.493
193751349 GT-AG 0 1.000000099473604e-05 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 14 1121536 1121582 Syncephalastrum racemosum 13706 ATG|GTGAGGCACA...ACGACCGTCATC/CATCGTCTCATG...CATAG|TAC 0 1 91.71
193751350 GT-AG 0 1.0139036583578608e-05 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 15 1121650 1121697 Syncephalastrum racemosum 13706 ACG|GTAGGCTAAA...CGAATCATACTC/ATCATACTCACT...TCTAG|TGC 1 1 93.638

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.802ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)