introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
15 rows where transcript_id = 34480541
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751336 | GT-AG | 0 | 1.1154877933324569e-05 | 66 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 1 | 1117755 | 1117820 | Syncephalastrum racemosum 13706 | ATT|GTACGGAATA...CATGCCTAACCA/TCATGCCTAACC...TTTAG|ATG | 0 | 1 | 3.368 |
193751337 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 2 | 1118023 | 1118073 | Syncephalastrum racemosum 13706 | AAG|GTAAGAACCG...GCCGTCCTATCT/TATCTTTCTATT...CATAG|GAT | 1 | 1 | 9.182 |
193751338 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 3 | 1119486 | 1119541 | Syncephalastrum racemosum 13706 | GAG|GTAAGAAAGA...CTCACTTTATGC/AAGGAGCTCACT...GATAG|GCG | 0 | 1 | 49.827 |
193751339 | GT-AG | 0 | 1.1370610591473564e-05 | 61 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 4 | 1119692 | 1119752 | Syncephalastrum racemosum 13706 | ACG|GTAAACCGCA...GAGCCCGTGAAC/CGTGAACTGACT...TCTAG|GTA | 0 | 1 | 54.145 |
193751340 | GT-AG | 0 | 0.0004071580718426 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 5 | 1119855 | 1119911 | Syncephalastrum racemosum 13706 | CGG|GTATGTGTGA...ATACTCGTAACG/ATACTCGTAACG...GATAG|AAT | 0 | 1 | 57.081 |
193751341 | GT-AG | 0 | 0.0022891756947165 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 6 | 1120059 | 1120109 | Syncephalastrum racemosum 13706 | GAG|GTATGCCACA...ATCGACTTAACG/ATTTGTCTGAGT...TTTAG|ATT | 0 | 1 | 61.313 |
193751342 | GT-AG | 0 | 8.542098242402533e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 7 | 1120200 | 1120249 | Syncephalastrum racemosum 13706 | GAG|GTATGTGGAT...CGTCCCATGACT/AAATATCTAAAT...ACAAG|CGA | 0 | 1 | 63.903 |
193751343 | GT-AG | 0 | 1.5546523753892754e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 8 | 1120359 | 1120408 | Syncephalastrum racemosum 13706 | AAT|GTAGGTTACA...AAGTACTCATCT/CAAGTACTCATC...CTCAG|TGG | 1 | 1 | 67.041 |
193751344 | GT-AG | 0 | 1.000000099473604e-05 | 45 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 9 | 1120619 | 1120663 | Syncephalastrum racemosum 13706 | CTG|GTAAGTCTGC...TGTCTTTTGTCC/TGTTATCTAATG...GTTAG|TCA | 1 | 1 | 73.086 |
193751345 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 10 | 1120751 | 1120799 | Syncephalastrum racemosum 13706 | AAG|GTGAGCTTCT...GCGAGATTAATT/GCGAGATTAATT...TTTAG|ACG | 1 | 1 | 75.59 |
193751346 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 11 | 1120935 | 1120985 | Syncephalastrum racemosum 13706 | CGA|GTAAGGCACC...ATGGATGTAACT/ATGGATGTAACT...CATAG|TCG | 1 | 1 | 79.476 |
193751347 | GT-AG | 0 | 0.0001195299479601 | 63 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 12 | 1121147 | 1121209 | Syncephalastrum racemosum 13706 | GAG|GTACTTATAG...TCATCCTTTTCT/CCTTTTCTCACC...ACAAG|CCT | 0 | 1 | 84.111 |
193751348 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 13 | 1121397 | 1121458 | Syncephalastrum racemosum 13706 | CAG|GTAAAGTTAT...TATCTGTTAACT/TATCTGTTAACT...GTCAG|CAA | 1 | 1 | 89.493 |
193751349 | GT-AG | 0 | 1.000000099473604e-05 | 47 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 14 | 1121536 | 1121582 | Syncephalastrum racemosum 13706 | ATG|GTGAGGCACA...ACGACCGTCATC/CATCGTCTCATG...CATAG|TAC | 0 | 1 | 91.71 |
193751350 | GT-AG | 0 | 1.0139036583578608e-05 | 48 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA481754 34480541 | 15 | 1121650 | 1121697 | Syncephalastrum racemosum 13706 | ACG|GTAGGCTAAA...CGAATCATACTC/ATCATACTCACT...TCTAG|TGC | 1 | 1 | 93.638 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);