introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
16 rows where transcript_id = 34480536
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Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751303 | GT-AG | 0 | 1.000000099473604e-05 | 100 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 1 | 1702129 | 1702228 | Syncephalastrum racemosum 13706 | TCG|GTAAGTGTTG...TCATTCTTGCTT/GAAGTGCTCACT...CATAG|GAA | 1 | 1 | 2.792 |
193751304 | GT-AG | 0 | 6.542996962055351e-05 | 70 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 2 | 1702050 | 1702119 | Syncephalastrum racemosum 13706 | AAG|GTATATACCA...ATCGCCTAATAT/CTAATATTCAAC...TCTAG|GAC | 1 | 1 | 3.043 |
193751305 | GT-AG | 0 | 6.375776873635328e-05 | 64 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 3 | 1701874 | 1701937 | Syncephalastrum racemosum 13706 | AGA|GTACGGCAAA...CATTTCTTAACT/CATTTCTTAACT...TTTAG|GTG | 2 | 1 | 6.17 |
193751306 | GC-AG | 0 | 1.4726925638420506e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 4 | 1701690 | 1701743 | Syncephalastrum racemosum 13706 | ACA|GCAAGTATTA...TTATTTTTAATT/TTATTTTTAATT...TGTAG|GGA | 0 | 1 | 9.799 |
193751307 | GT-AG | 0 | 0.0001439428748678 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 5 | 1701484 | 1701534 | Syncephalastrum racemosum 13706 | CAG|GTACGCTAAG...AAGTCTGTGAAT/TGAATACTAAAA...CTTAG|TCA | 2 | 1 | 14.126 |
193751308 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 6 | 1701152 | 1701205 | Syncephalastrum racemosum 13706 | AAG|GTAACACAGA...TTCACTCTATTT/CACATGTTCACT...TACAG|CCT | 1 | 1 | 21.887 |
193751309 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 7 | 1700868 | 1700924 | Syncephalastrum racemosum 13706 | AAG|GTAAGAGGCA...GTTTGCTTACTC/TGTTTGCTTACT...ACTAG|TTA | 0 | 1 | 28.224 |
193751310 | GT-AG | 0 | 3.674941771378085e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 8 | 1700677 | 1700725 | Syncephalastrum racemosum 13706 | TTA|GTAAGTGTTC...GATATCTTATAC/AGATATCTTATA...TATAG|CAA | 1 | 1 | 32.189 |
193751311 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 9 | 1700541 | 1700589 | Syncephalastrum racemosum 13706 | TTG|GTAAGGTACG...TTGTGCTTACAC/CTTGTGCTTACA...TGTAG|CTC | 1 | 1 | 34.618 |
193751312 | GT-AG | 0 | 2.874349081153303e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 10 | 1700044 | 1700097 | Syncephalastrum racemosum 13706 | AAG|GTAACATAAT...GAGGCTTTTGCT/CTTTTGCTGACT...TTAAG|AGC | 0 | 1 | 46.985 |
193751313 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 11 | 1699898 | 1699948 | Syncephalastrum racemosum 13706 | CAG|GTAACAAAGA...TGCGCCTCACTC/ATGCGCCTCACT...TATAG|GGG | 2 | 1 | 49.637 |
193751314 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 12 | 1699426 | 1699474 | Syncephalastrum racemosum 13706 | CAT|GTAAGGATGT...TAATACTTATCT/GTAATACTTATC...CTTAG|CGC | 2 | 1 | 61.446 |
193751315 | GT-AG | 0 | 0.0013353821608395 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 13 | 1699309 | 1699358 | Syncephalastrum racemosum 13706 | GAA|GTACGTTATA...AATTTCTTGCTC/TTCTTGCTCATA...GCTAG|ATC | 0 | 1 | 63.317 |
193751316 | GT-AG | 0 | 6.39345143914458e-05 | 59 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 14 | 1699126 | 1699184 | Syncephalastrum racemosum 13706 | AAC|GTAAGTTTTC...GAATCCGTAGGC/CGTAGGCTAATG...CGTAG|TAA | 1 | 1 | 66.778 |
193751317 | GT-AG | 0 | 1.000000099473604e-05 | 45 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 15 | 1698561 | 1698605 | Syncephalastrum racemosum 13706 | AAG|GTAAGACTGT...AAAGCCGTGGCC/GCAGAGCTAATT...ACCAG|TGT | 2 | 1 | 81.295 |
193751318 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 | 16 | 1697853 | 1697903 | Syncephalastrum racemosum 13706 | GAA|GTAAGTGTAA...TATACAATGACC/GAGAGGCTGATT...TTTAG|ATT | 2 | 1 | 99.637 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);