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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

16 rows where transcript_id = 34480536

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Suggested facets: dinucleotide_pair, score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751303 GT-AG 0 1.000000099473604e-05 100 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 1 1702129 1702228 Syncephalastrum racemosum 13706 TCG|GTAAGTGTTG...TCATTCTTGCTT/GAAGTGCTCACT...CATAG|GAA 1 1 2.792
193751304 GT-AG 0 6.542996962055351e-05 70 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 2 1702050 1702119 Syncephalastrum racemosum 13706 AAG|GTATATACCA...ATCGCCTAATAT/CTAATATTCAAC...TCTAG|GAC 1 1 3.043
193751305 GT-AG 0 6.375776873635328e-05 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 3 1701874 1701937 Syncephalastrum racemosum 13706 AGA|GTACGGCAAA...CATTTCTTAACT/CATTTCTTAACT...TTTAG|GTG 2 1 6.17
193751306 GC-AG 0 1.4726925638420506e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 4 1701690 1701743 Syncephalastrum racemosum 13706 ACA|GCAAGTATTA...TTATTTTTAATT/TTATTTTTAATT...TGTAG|GGA 0 1 9.799
193751307 GT-AG 0 0.0001439428748678 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 5 1701484 1701534 Syncephalastrum racemosum 13706 CAG|GTACGCTAAG...AAGTCTGTGAAT/TGAATACTAAAA...CTTAG|TCA 2 1 14.126
193751308 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 6 1701152 1701205 Syncephalastrum racemosum 13706 AAG|GTAACACAGA...TTCACTCTATTT/CACATGTTCACT...TACAG|CCT 1 1 21.887
193751309 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 7 1700868 1700924 Syncephalastrum racemosum 13706 AAG|GTAAGAGGCA...GTTTGCTTACTC/TGTTTGCTTACT...ACTAG|TTA 0 1 28.224
193751310 GT-AG 0 3.674941771378085e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 8 1700677 1700725 Syncephalastrum racemosum 13706 TTA|GTAAGTGTTC...GATATCTTATAC/AGATATCTTATA...TATAG|CAA 1 1 32.189
193751311 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 9 1700541 1700589 Syncephalastrum racemosum 13706 TTG|GTAAGGTACG...TTGTGCTTACAC/CTTGTGCTTACA...TGTAG|CTC 1 1 34.618
193751312 GT-AG 0 2.874349081153303e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 10 1700044 1700097 Syncephalastrum racemosum 13706 AAG|GTAACATAAT...GAGGCTTTTGCT/CTTTTGCTGACT...TTAAG|AGC 0 1 46.985
193751313 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 11 1699898 1699948 Syncephalastrum racemosum 13706 CAG|GTAACAAAGA...TGCGCCTCACTC/ATGCGCCTCACT...TATAG|GGG 2 1 49.637
193751314 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 12 1699426 1699474 Syncephalastrum racemosum 13706 CAT|GTAAGGATGT...TAATACTTATCT/GTAATACTTATC...CTTAG|CGC 2 1 61.446
193751315 GT-AG 0 0.0013353821608395 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 13 1699309 1699358 Syncephalastrum racemosum 13706 GAA|GTACGTTATA...AATTTCTTGCTC/TTCTTGCTCATA...GCTAG|ATC 0 1 63.317
193751316 GT-AG 0 6.39345143914458e-05 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 14 1699126 1699184 Syncephalastrum racemosum 13706 AAC|GTAAGTTTTC...GAATCCGTAGGC/CGTAGGCTAATG...CGTAG|TAA 1 1 66.778
193751317 GT-AG 0 1.000000099473604e-05 45 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 15 1698561 1698605 Syncephalastrum racemosum 13706 AAG|GTAAGACTGT...AAAGCCGTGGCC/GCAGAGCTAATT...ACCAG|TGT 2 1 81.295
193751318 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA449800 34480536 16 1697853 1697903 Syncephalastrum racemosum 13706 GAA|GTAAGTGTAA...TATACAATGACC/GAGAGGCTGATT...TTTAG|ATT 2 1 99.637

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 26.544ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)