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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

21 rows where transcript_id = 34480532

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751268 GT-AG 0 8.699136020595169e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 1 4648255 4648307 Syncephalastrum racemosum 13706 AAT|GTAATGTTTA...TTCTCCTGATCT/CTTCTCCTGATC...TCTAG|TAT 1 1 0.433
193751269 GT-AG 0 0.0040362705189833 47 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 2 4648367 4648413 Syncephalastrum racemosum 13706 GAA|GTACGTTTAT...TTTTGTTTAACA/TTTTGTTTAACA...CATAG|CCT 0 1 2.028
193751270 GT-AG 0 0.0128343534836808 63 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 3 4648527 4648589 Syncephalastrum racemosum 13706 AGA|GTATGTCTCA...CTTGTATTGACA/CTTGTATTGACA...GTAAG|GCA 2 1 5.082
193751271 GT-AG 0 0.000790963382207 63 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 4 4648901 4648963 Syncephalastrum racemosum 13706 ATG|GTACTTTATC...TTCTCTTTTTCT/CTTTTTCTGATG...ATTAG|ATC 1 1 13.49
193751272 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 5 4649012 4649067 Syncephalastrum racemosum 13706 GCG|GTAAGTGGCT...ACCGTCCTGATA/GAGGTACTGACT...TTTAG|ACG 1 1 14.788
193751273 GT-AG 0 1.000000099473604e-05 70 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 6 4649218 4649287 Syncephalastrum racemosum 13706 CGG|GTAAGGCCCT...TTCTCCTTTTCA/CGGTATCTAACC...GACAG|GTG 1 1 18.843
193751274 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 7 4649464 4649513 Syncephalastrum racemosum 13706 CAG|GTAATTTGAT...GTACTCATGATG/CATGTACTCATG...ACTAG|TTT 0 1 23.601
193751275 GT-AG 0 0.0007533969437954 55 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 8 4649660 4649714 Syncephalastrum racemosum 13706 AAA|GTATGTATAT...ACGCGCTTAAAG/AACGCGCTTAAA...TTCAG|GGC 2 1 27.548
193751276 GT-AG 0 1.000000099473604e-05 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 9 4649950 4650010 Syncephalastrum racemosum 13706 GAG|GTGAGAGGAA...CAAGTTTCAGAG/GCGATACTGACT...TATAG|CGT 0 1 33.901
193751277 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 10 4650118 4650171 Syncephalastrum racemosum 13706 TGG|GTGAGTTCCT...ATGCCCTTTTCC/AGCCGGCTCAAT...TTTAG|ACG 2 1 36.794
193751278 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 11 4650734 4650791 Syncephalastrum racemosum 13706 GAG|GTAATTTTAG...GTATTCATCGCC/TGGGTATTCATC...GTTAG|ATT 0 1 51.987
193751279 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 12 4650858 4650906 Syncephalastrum racemosum 13706 ATG|GTAAGCATCA...ATGTACTCAATG/AATGTACTCAAT...TCTAG|GGT 0 1 53.771
193751280 GT-AG 0 1.000000099473604e-05 63 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 13 4651084 4651146 Syncephalastrum racemosum 13706 GAG|GTAAACAAGA...TGCGCCTGACCA/ATGCGCCTGACC...ACTAG|GCG 0 1 58.556
193751281 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 14 4651525 4651583 Syncephalastrum racemosum 13706 AAT|GTAAGTATAT...CGGATTGTAGCG/CGGGGAGTAACG...ACCAG|GTT 0 1 68.775
193751282 GT-AG 0 1.000000099473604e-05 66 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 15 4651720 4651785 Syncephalastrum racemosum 13706 CAG|GTAAGCGTCA...CCTCTCTTGCGT/ATGGGACTAAGG...GGTAG|ATG 1 1 72.452
193751283 GT-AG 0 6.236216485347288e-05 69 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 16 4651905 4651973 Syncephalastrum racemosum 13706 AAG|GTCTGTTGCA...ACCATCTTACCA/AAAGATCTAATA...CATAG|CTT 0 1 75.669
193751284 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 17 4652068 4652118 Syncephalastrum racemosum 13706 AAG|GTAACACAGC...CTCACTTTTCTA/CAGAAGCTCACT...TAAAG|GCA 1 1 78.21
193751285 GT-AG 0 4.11027279512514e-05 69 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 18 4652253 4652321 Syncephalastrum racemosum 13706 CAC|GTAGGTCATC...TTTTCCCTACCC/GCAAAACTCATG...TATAG|TTT 0 1 81.833
193751286 GT-AG 0 0.0129300157020964 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 19 4652796 4652856 Syncephalastrum racemosum 13706 CTG|GTATGTCTTG...AACGTCTTATCT/AAACGTCTTATC...TGTAG|CCC 0 1 94.647
193751287 GT-AG 0 3.787087252473977e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 20 4652897 4652948 Syncephalastrum racemosum 13706 AAG|GTATATAGAG...CACTCCTCAAAG/CAGATGCTCACT...GATAG|GAT 1 1 95.729
193751288 GT-AG 0 1.000000099473604e-05 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 21 4653098 4653158 Syncephalastrum racemosum 13706 TTG|GTAAGGGATA...ATCCCCTTTTCT/GTCGTGCTCATC...TGTAG|TAC 0 1 99.757

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 28.269ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)