introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
21 rows where transcript_id = 34480532
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751268 | GT-AG | 0 | 8.699136020595169e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 1 | 4648255 | 4648307 | Syncephalastrum racemosum 13706 | AAT|GTAATGTTTA...TTCTCCTGATCT/CTTCTCCTGATC...TCTAG|TAT | 1 | 1 | 0.433 |
193751269 | GT-AG | 0 | 0.0040362705189833 | 47 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 2 | 4648367 | 4648413 | Syncephalastrum racemosum 13706 | GAA|GTACGTTTAT...TTTTGTTTAACA/TTTTGTTTAACA...CATAG|CCT | 0 | 1 | 2.028 |
193751270 | GT-AG | 0 | 0.0128343534836808 | 63 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 3 | 4648527 | 4648589 | Syncephalastrum racemosum 13706 | AGA|GTATGTCTCA...CTTGTATTGACA/CTTGTATTGACA...GTAAG|GCA | 2 | 1 | 5.082 |
193751271 | GT-AG | 0 | 0.000790963382207 | 63 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 4 | 4648901 | 4648963 | Syncephalastrum racemosum 13706 | ATG|GTACTTTATC...TTCTCTTTTTCT/CTTTTTCTGATG...ATTAG|ATC | 1 | 1 | 13.49 |
193751272 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 5 | 4649012 | 4649067 | Syncephalastrum racemosum 13706 | GCG|GTAAGTGGCT...ACCGTCCTGATA/GAGGTACTGACT...TTTAG|ACG | 1 | 1 | 14.788 |
193751273 | GT-AG | 0 | 1.000000099473604e-05 | 70 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 6 | 4649218 | 4649287 | Syncephalastrum racemosum 13706 | CGG|GTAAGGCCCT...TTCTCCTTTTCA/CGGTATCTAACC...GACAG|GTG | 1 | 1 | 18.843 |
193751274 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 7 | 4649464 | 4649513 | Syncephalastrum racemosum 13706 | CAG|GTAATTTGAT...GTACTCATGATG/CATGTACTCATG...ACTAG|TTT | 0 | 1 | 23.601 |
193751275 | GT-AG | 0 | 0.0007533969437954 | 55 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 8 | 4649660 | 4649714 | Syncephalastrum racemosum 13706 | AAA|GTATGTATAT...ACGCGCTTAAAG/AACGCGCTTAAA...TTCAG|GGC | 2 | 1 | 27.548 |
193751276 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 9 | 4649950 | 4650010 | Syncephalastrum racemosum 13706 | GAG|GTGAGAGGAA...CAAGTTTCAGAG/GCGATACTGACT...TATAG|CGT | 0 | 1 | 33.901 |
193751277 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 10 | 4650118 | 4650171 | Syncephalastrum racemosum 13706 | TGG|GTGAGTTCCT...ATGCCCTTTTCC/AGCCGGCTCAAT...TTTAG|ACG | 2 | 1 | 36.794 |
193751278 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 11 | 4650734 | 4650791 | Syncephalastrum racemosum 13706 | GAG|GTAATTTTAG...GTATTCATCGCC/TGGGTATTCATC...GTTAG|ATT | 0 | 1 | 51.987 |
193751279 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 12 | 4650858 | 4650906 | Syncephalastrum racemosum 13706 | ATG|GTAAGCATCA...ATGTACTCAATG/AATGTACTCAAT...TCTAG|GGT | 0 | 1 | 53.771 |
193751280 | GT-AG | 0 | 1.000000099473604e-05 | 63 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 13 | 4651084 | 4651146 | Syncephalastrum racemosum 13706 | GAG|GTAAACAAGA...TGCGCCTGACCA/ATGCGCCTGACC...ACTAG|GCG | 0 | 1 | 58.556 |
193751281 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 14 | 4651525 | 4651583 | Syncephalastrum racemosum 13706 | AAT|GTAAGTATAT...CGGATTGTAGCG/CGGGGAGTAACG...ACCAG|GTT | 0 | 1 | 68.775 |
193751282 | GT-AG | 0 | 1.000000099473604e-05 | 66 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 15 | 4651720 | 4651785 | Syncephalastrum racemosum 13706 | CAG|GTAAGCGTCA...CCTCTCTTGCGT/ATGGGACTAAGG...GGTAG|ATG | 1 | 1 | 72.452 |
193751283 | GT-AG | 0 | 6.236216485347288e-05 | 69 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 16 | 4651905 | 4651973 | Syncephalastrum racemosum 13706 | AAG|GTCTGTTGCA...ACCATCTTACCA/AAAGATCTAATA...CATAG|CTT | 0 | 1 | 75.669 |
193751284 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 17 | 4652068 | 4652118 | Syncephalastrum racemosum 13706 | AAG|GTAACACAGC...CTCACTTTTCTA/CAGAAGCTCACT...TAAAG|GCA | 1 | 1 | 78.21 |
193751285 | GT-AG | 0 | 4.11027279512514e-05 | 69 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 18 | 4652253 | 4652321 | Syncephalastrum racemosum 13706 | CAC|GTAGGTCATC...TTTTCCCTACCC/GCAAAACTCATG...TATAG|TTT | 0 | 1 | 81.833 |
193751286 | GT-AG | 0 | 0.0129300157020964 | 61 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 19 | 4652796 | 4652856 | Syncephalastrum racemosum 13706 | CTG|GTATGTCTTG...AACGTCTTATCT/AAACGTCTTATC...TGTAG|CCC | 0 | 1 | 94.647 |
193751287 | GT-AG | 0 | 3.787087252473977e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 20 | 4652897 | 4652948 | Syncephalastrum racemosum 13706 | AAG|GTATATAGAG...CACTCCTCAAAG/CAGATGCTCACT...GATAG|GAT | 1 | 1 | 95.729 |
193751288 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA467773 34480532 | 21 | 4653098 | 4653158 | Syncephalastrum racemosum 13706 | TTG|GTAAGGGATA...ATCCCCTTTTCT/GTCGTGCTCATC...TGTAG|TAC | 0 | 1 | 99.757 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);