introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 34480530
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751250 | GT-AG | 0 | 1.000000099473604e-05 | 48 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 | 1 | 4333951 | 4333998 | Syncephalastrum racemosum 13706 | AAG|GTAAACGCCA...CGTTCCTTTTTT/GTCTTGCTAATG...TGTAG|TTT | 0 | 1 | 0.483 |
193751251 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 | 2 | 4334141 | 4334202 | Syncephalastrum racemosum 13706 | ATG|GTAACGCCAA...TCATCCTGGAGT/AAGTTATTCATC...AACAG|GTC | 1 | 1 | 4.291 |
193751252 | GT-AG | 0 | 1.405895473406342e-05 | 62 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 | 3 | 4334764 | 4334825 | Syncephalastrum racemosum 13706 | GCG|GTACGATACG...AGCTTCTTTTCT/ATCTTGCTTACG...TACAG|AGA | 1 | 1 | 19.335 |
193751253 | GT-AG | 0 | 0.003641628851262 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 | 4 | 4335045 | 4335097 | Syncephalastrum racemosum 13706 | CCG|GTACGTTTTG...AATTCCATAACT/AATTCCATAACT...TCTAG|GCC | 1 | 1 | 25.208 |
193751254 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 | 5 | 4335322 | 4335375 | Syncephalastrum racemosum 13706 | TCG|GTACATACAC...TACTCATTCTTT/GAAATACTCATT...GTTAG|CCT | 0 | 1 | 31.215 |
193751255 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 | 6 | 4335761 | 4335814 | Syncephalastrum racemosum 13706 | ATT|GTAAGTCGAG...GAAGCGTTACCT/CTGCTGTTCACT...CATAG|CCA | 1 | 1 | 41.539 |
193751256 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 | 7 | 4335954 | 4336006 | Syncephalastrum racemosum 13706 | GGG|GTAAGTAAAA...GTGGCACTGATC/GTGGCACTGATC...CACAG|TGA | 2 | 1 | 45.267 |
193751257 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 | 8 | 4336248 | 4336299 | Syncephalastrum racemosum 13706 | GAG|GTAAACATGA...GCTGTCTCATGC/TGCTGTCTCATG...ATTAG|ATT | 0 | 1 | 51.73 |
193751258 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 | 9 | 4336456 | 4336507 | Syncephalastrum racemosum 13706 | AAG|GTAGGATGAA...GCGTTTTTAATT/ATGTATCTCACC...GTTAG|ATT | 0 | 1 | 55.913 |
193751259 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 | 10 | 4336707 | 4336757 | Syncephalastrum racemosum 13706 | AAG|GTAAATAAGG...ATGGTATTGACT/ATGGTATTGACT...GATAG|CGC | 1 | 1 | 61.25 |
193751260 | GT-AG | 0 | 1.000000099473604e-05 | 67 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 | 11 | 4337354 | 4337420 | Syncephalastrum racemosum 13706 | CAG|GTAACAAAGA...TTTTTCTTTTCT/TCAAATTTAACT...TGCAG|GCT | 0 | 1 | 77.233 |
193751261 | GT-AG | 0 | 1.000000099473604e-05 | 94 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 | 12 | 4338027 | 4338120 | Syncephalastrum racemosum 13706 | GAA|GTAAGTAAAA...CTTTCCTTTTTT/ACACGACTCACA...TCTAG|GCA | 0 | 1 | 93.484 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);