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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

12 rows where transcript_id = 34480530

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751250 GT-AG 0 1.000000099473604e-05 48 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 1 4333951 4333998 Syncephalastrum racemosum 13706 AAG|GTAAACGCCA...CGTTCCTTTTTT/GTCTTGCTAATG...TGTAG|TTT 0 1 0.483
193751251 GT-AG 0 1.000000099473604e-05 62 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 2 4334141 4334202 Syncephalastrum racemosum 13706 ATG|GTAACGCCAA...TCATCCTGGAGT/AAGTTATTCATC...AACAG|GTC 1 1 4.291
193751252 GT-AG 0 1.405895473406342e-05 62 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 3 4334764 4334825 Syncephalastrum racemosum 13706 GCG|GTACGATACG...AGCTTCTTTTCT/ATCTTGCTTACG...TACAG|AGA 1 1 19.335
193751253 GT-AG 0 0.003641628851262 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 4 4335045 4335097 Syncephalastrum racemosum 13706 CCG|GTACGTTTTG...AATTCCATAACT/AATTCCATAACT...TCTAG|GCC 1 1 25.208
193751254 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 5 4335322 4335375 Syncephalastrum racemosum 13706 TCG|GTACATACAC...TACTCATTCTTT/GAAATACTCATT...GTTAG|CCT 0 1 31.215
193751255 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 6 4335761 4335814 Syncephalastrum racemosum 13706 ATT|GTAAGTCGAG...GAAGCGTTACCT/CTGCTGTTCACT...CATAG|CCA 1 1 41.539
193751256 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 7 4335954 4336006 Syncephalastrum racemosum 13706 GGG|GTAAGTAAAA...GTGGCACTGATC/GTGGCACTGATC...CACAG|TGA 2 1 45.267
193751257 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 8 4336248 4336299 Syncephalastrum racemosum 13706 GAG|GTAAACATGA...GCTGTCTCATGC/TGCTGTCTCATG...ATTAG|ATT 0 1 51.73
193751258 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 9 4336456 4336507 Syncephalastrum racemosum 13706 AAG|GTAGGATGAA...GCGTTTTTAATT/ATGTATCTCACC...GTTAG|ATT 0 1 55.913
193751259 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 10 4336707 4336757 Syncephalastrum racemosum 13706 AAG|GTAAATAAGG...ATGGTATTGACT/ATGGTATTGACT...GATAG|CGC 1 1 61.25
193751260 GT-AG 0 1.000000099473604e-05 67 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 11 4337354 4337420 Syncephalastrum racemosum 13706 CAG|GTAACAAAGA...TTTTTCTTTTCT/TCAAATTTAACT...TGCAG|GCT 0 1 77.233
193751261 GT-AG 0 1.000000099473604e-05 94 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA501635 34480530 12 4338027 4338120 Syncephalastrum racemosum 13706 GAA|GTAAGTAAAA...CTTTCCTTTTTT/ACACGACTCACA...TCTAG|GCA 0 1 93.484

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.075ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)