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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

11 rows where transcript_id = 34480528

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
193751237 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 1 1355632 1355688 Syncephalastrum racemosum 13706 AAG|GTCAGGAAAT...GTTCTCATAGTC/TCAGTTCTCATA...AATAG|GTG 1 1 4.913
193751238 GT-AG 0 1.000000099473604e-05 74 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 2 1355244 1355317 Syncephalastrum racemosum 13706 CAG|GTGTGACAGT...CACTTTTTGACG/CACTTTTTGACG...TCAAG|ATG 0 1 13.033
193751239 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 3 1355001 1355060 Syncephalastrum racemosum 13706 ATG|GTGCGTATCA...ACAATTATGATT/GAAGGTCTGACA...TTTAG|CGG 0 1 17.766
193751240 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 4 1354823 1354886 Syncephalastrum racemosum 13706 AAG|GTACTTGAGG...TATGACATAACA/CATCTACTAACT...CGCAG|GCC 0 1 20.714
193751241 GT-AG 0 1.000000099473604e-05 68 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 5 1354605 1354672 Syncephalastrum racemosum 13706 AAA|GTTAGTATAA...CTTACATTAATA/CTTACATTAATA...CGCAG|CTG 0 1 24.593
193751242 GT-AG 0 1.000000099473604e-05 61 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 6 1354357 1354417 Syncephalastrum racemosum 13706 AAG|GTAAAGCAGT...GCAGCTTTAGCT/CTTTAGCTGATG...AATAG|TTC 1 1 29.428
193751243 GT-AG 0 0.002818391807202 53 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 7 1353439 1353491 Syncephalastrum racemosum 13706 AGG|GTACCATGGC...GGTGCCTTCCTC/ATGCCCCTAAGG...CGCAG|GCC 2 1 51.797
193751244 GT-AG 0 1.000000099473604e-05 67 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 8 1352528 1352594 Syncephalastrum racemosum 13706 ATG|GTACGGCATA...AGTGTCTTGCAA/ACGACAATGATT...TCTAG|CTT 0 1 73.623
193751245 GT-AG 0 1.000000099473604e-05 63 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 9 1352438 1352500 Syncephalastrum racemosum 13706 AAG|GTAATGGCAT...TGTGTCCTATTA/AAGATGCTCACT...TATAG|AGT 0 1 74.321
193751246 GT-AG 0 0.000291431382147 84 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 10 1351836 1351919 Syncephalastrum racemosum 13706 CCA|GTCCTTAGCA...ACATCTTTGATC/ACATCTTTGATC...AAGAG|AAA 2 1 87.717
193751247 GT-AG 0 0.0008500157172133 62 rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 11 1351399 1351460 Syncephalastrum racemosum 13706 AAA|GTATTTCCAT...CATATTTTGAGA/CATATTTTGAGA...GTTAG|TTC 2 1 97.414

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.446ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)