introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
11 rows where transcript_id = 34480528
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
193751237 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 | 1 | 1355632 | 1355688 | Syncephalastrum racemosum 13706 | AAG|GTCAGGAAAT...GTTCTCATAGTC/TCAGTTCTCATA...AATAG|GTG | 1 | 1 | 4.913 |
193751238 | GT-AG | 0 | 1.000000099473604e-05 | 74 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 | 2 | 1355244 | 1355317 | Syncephalastrum racemosum 13706 | CAG|GTGTGACAGT...CACTTTTTGACG/CACTTTTTGACG...TCAAG|ATG | 0 | 1 | 13.033 |
193751239 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 | 3 | 1355001 | 1355060 | Syncephalastrum racemosum 13706 | ATG|GTGCGTATCA...ACAATTATGATT/GAAGGTCTGACA...TTTAG|CGG | 0 | 1 | 17.766 |
193751240 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 | 4 | 1354823 | 1354886 | Syncephalastrum racemosum 13706 | AAG|GTACTTGAGG...TATGACATAACA/CATCTACTAACT...CGCAG|GCC | 0 | 1 | 20.714 |
193751241 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 | 5 | 1354605 | 1354672 | Syncephalastrum racemosum 13706 | AAA|GTTAGTATAA...CTTACATTAATA/CTTACATTAATA...CGCAG|CTG | 0 | 1 | 24.593 |
193751242 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 | 6 | 1354357 | 1354417 | Syncephalastrum racemosum 13706 | AAG|GTAAAGCAGT...GCAGCTTTAGCT/CTTTAGCTGATG...AATAG|TTC | 1 | 1 | 29.428 |
193751243 | GT-AG | 0 | 0.002818391807202 | 53 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 | 7 | 1353439 | 1353491 | Syncephalastrum racemosum 13706 | AGG|GTACCATGGC...GGTGCCTTCCTC/ATGCCCCTAAGG...CGCAG|GCC | 2 | 1 | 51.797 |
193751244 | GT-AG | 0 | 1.000000099473604e-05 | 67 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 | 8 | 1352528 | 1352594 | Syncephalastrum racemosum 13706 | ATG|GTACGGCATA...AGTGTCTTGCAA/ACGACAATGATT...TCTAG|CTT | 0 | 1 | 73.623 |
193751245 | GT-AG | 0 | 1.000000099473604e-05 | 63 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 | 9 | 1352438 | 1352500 | Syncephalastrum racemosum 13706 | AAG|GTAATGGCAT...TGTGTCCTATTA/AAGATGCTCACT...TATAG|AGT | 0 | 1 | 74.321 |
193751246 | GT-AG | 0 | 0.000291431382147 | 84 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 | 10 | 1351836 | 1351919 | Syncephalastrum racemosum 13706 | CCA|GTCCTTAGCA...ACATCTTTGATC/ACATCTTTGATC...AAGAG|AAA | 2 | 1 | 87.717 |
193751247 | GT-AG | 0 | 0.0008500157172133 | 62 | rna-gnl|WGS:MCGN|BCR43DRAFT_mRNA519940 34480528 | 11 | 1351399 | 1351460 | Syncephalastrum racemosum 13706 | AAA|GTATTTCCAT...CATATTTTGAGA/CATATTTTGAGA...GTTAG|TTC | 2 | 1 | 97.414 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);